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The map label for this gene is dps

Identifier: 15898865

GI number: 15898865

Start: 1895173

End: 1895739

Strand: Direct

Name: dps

Synonym: SSO2079

Alternate gene names: 15898865

Gene position: 1895173-1895739 (Clockwise)

Preceding gene: 15898861

Following gene: 15898866

Centisome position: 63.34

GC content: 40.92

Gene sequence:

>567_bases
ATGCAAGAGAAACCCCAAGAACCAAAGGTAGTCGGAGTAGAAATCTTGGAAAAATCTGGGTTAGATATCAAAAAGTTAGT
AGATAAACTAGTTAAAGCAACAGCTGCAGAGTTCACCACATATTACTACTATACCATATTGAGAATGCACCTAACTGGTA
TGGAAGGAGAGGGTCTTAAGGAAATAGCTGAGGACGCTAGGCTTGAGGATAGACTTCACTTCGAACTAATGACTCAAAGG
ATTTATGAACTGGGAGGAGGTCTACCTAGAGACATAAGGCAGCTTGCTGATATTTCAGCTTGCTCCGATGCGTATTTACC
AGAGAATTGGAAAGACCCTAAGGAGATATTAAAGGTTTTGTTAGAAGCTGAGCAATGCGCGATAAGAACTTGGAAAGAAG
TATGTGATATGACGTATGGAAAAGATCCTAGAACTTACGATTTAGCGCAGAGGATACTTCAAGAAGAGATAGAGCACGAA
GCGTGGTTCTTAGAGTTACTATACGGAAGACCATCGGGTCATTTCAGAAGAAGTTCACCAGGGAACGCTCCATATTCCAA
GAAATAA

Upstream 100 bases:

>100_bases
TTATCATTAGTTTGAAACTACTTTTAACTATAAGTTAAAATGACTCTTAAATAGAAGGATTTATTAACTAGAAATGAGTA
TTGACTATTAGGGTGTATGA

Downstream 100 bases:

>100_bases
TAAAAGGTAACTGTATTTTTTCCTATTTCTATTTTTAATTGGTGATTATTCAATGCTAGTCAGAGTGTCTAGCTTATCAG
ACTTGGAAGAGAAGAAACCA

Product: DNA protection protein DPS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MQEKPQEPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQR
IYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHE
AWFLELLYGRPSGHFRRSSPGNAPYSKK

Sequences:

>Translated_188_residues
MQEKPQEPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQR
IYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHE
AWFLELLYGRPSGHFRRSSPGNAPYSKK
>Mature_188_residues
MQEKPQEPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQR
IYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHE
AWFLELLYGRPSGHFRRSSPGNAPYSKK

Specific function: Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. In vi

COG id: COG2406

COG function: function code R; Protein distantly related to bacterial ferritins

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DPS_SULSO (P95855)

Other databases:

- EMBL:   Y08256
- EMBL:   AE006641
- EMBL:   AB047031
- PIR:   S73096
- RefSeq:   NP_343470.1
- PDB:   2CLB
- PDBsum:   2CLB
- ProteinModelPortal:   P95855
- SMR:   P95855
- GeneID:   1453587
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO2079
- NMPDR:   fig|273057.1.peg.1893
- HOGENOM:   HBG538256
- OMA:   GPSGHFL
- ProtClustDB:   PRK13456
- BioCyc:   SSOL273057:SSO2079-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331
- InterPro:   IPR014490
- Gene3D:   G3DSA:1.20.1260.10
- PIRSF:   PIRSF018063

Pfam domain/function: PF00210 Ferritin; SSF47240 Ferritin/RR_like

EC number: NA

Molecular weight: Translated: 21770; Mature: 21770

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEKPQEPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLK
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGRPSGHFRRSSP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GNAPYSKK
CCCCCCCC
>Mature Secondary Structure
MQEKPQEPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLK
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGRPSGHFRRSSP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GNAPYSKK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726