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The map label for this gene is ygcB [C]

Identifier: 15898794

GI number: 15898794

Start: 1817612

End: 1819159

Strand: Direct

Name: ygcB [C]

Synonym: SSO1999

Alternate gene names: 15898794

Gene position: 1817612-1819159 (Clockwise)

Preceding gene: 15898793

Following gene: 15898795

Centisome position: 60.74

GC content: 37.14

Gene sequence:

>1548_bases
TTGAAGTTGAGGCTAAGGAAGCATATGAGGTTGGTGGAGAATATGTTGTCTTTAGCTGATTTCTATAACGATTTCATAAC
TCGTCATGGCTTTGAGGAAAGGAAGGGTATTGAAGAGACTTTACTAAATTTGGAAAACGGGCATAGCGTTATACTTAAGG
CTCCCACTGGTTACGGTAAAACAACGTTAACTATGATTTTAGCTAATGCCGTTAGTAGTGATATTGACCTAGGTAGTAGG
GTTATTCACGTATTGCCGTATAGGGCTATTGTGCAAGATTTGTATCTAAAGCTGAAAAATTACGCTGATAGAGGGGTAAT
TTACACTAAGAATATTGGTGCCCAAGACATGGATTATCAAGATTCCCCTTTTTTCATGAAGAAAGTTAACGTTACGACTC
TAGATACCTTCATTCTCAATTTGTTTAAATTACCTACTGTTGATTTTAAGTTAATTTTTAAAAATTACGGTTCTCATTAT
GAGTTCCCTAGGGCGTTAATATATAGTAGTATTGTAATATTTGATGAATTTCACTTATTGGGAGAGGATGGTAAGAGTTT
AGGAGCTGGACTTGCCGCTTTAGAAGTTTTGAGGGATGCGGGTGTTCCGATAGTAGTTACTTCAGCTACAATAGATAAGG
GGTTGGAGAGGGTTTTGATGAACAAGCTGGGTAAGAATGTAAAGGTAGTTAACGCGGATGATTTTAAAATTGATAGAAAG
ATATACGTTAACGTATTGGAGAATGATGAGATTTCCATTACTGAGGAAAAGGTAAAAGAGGGTAAGAGGGTTCTTTTGGT
TTACAATACGAGAATGGGGGCAATTGAAGCCTATAAGAAGTTAAAGGGAAGGGGGTTATCTCCTATTCTAATTCACAGTA
AGTTCAGTAAAAAGGATAGGATAGATAAAGTGAACAAGATAAACGAGGCAAAGCTGGTAGTTTCAACTCAAGTTATAGAG
GCCGGTATTGATACTTCTTTTGACGTTTTAATAACTGAAGCTTCTCCCTCTCATAATCTAATTCAAAGGGCTGGTAGGGT
TGCGAGGTATGGGAAGGGAGGAAGAGGGAAATTAGAGGGCGAGGTTTACATTTTCCCGTTTAGTGGAAAGGTTTATGATG
AGAGGGAGGTTAAGGAGACTGTGGAAAGGGTAAGGGAACTAAAGACTATTGATGAGAACTTACTCATTGAAAGGGATTAC
ACAGAGGTGATTGATTCGATTCTGGCTAAGGATCTATCTGTAATAGATAACTCCGTTTTCGTGGACTCTAAAAAGGTGAA
GTCGATATACGAGAAGATTTGTTCTATTACTAGGAATGCAAGTATCATATTGGGATTTCCGCCAAACAGTAATGACGTTA
ATGATGCTATACCCTTAACTGAGGAGGAGGCAATTAAAATAATAGAGAGTAAGGGAAGTTCTGCGTTTGTTGGGAATGGT
AATGTTAAATTATATAACAAGAAATGCCTTCAATTGGAAATGTTGAAGAATGATATTTTAGGAGTTAGGATTCAAGATTA
TAATAGTGAAATAGGTGGTGTGTATTGA

Upstream 100 bases:

>100_bases
GTTACTTTTTGGGAAGAGAACGGGTATATATGGGGAAAGGAGGGAGGACCAATAAGGTACATCTTGCCGGTGGCTACCTA
TCCCTTAGCTAGTAAGGAGG

Downstream 100 bases:

>100_bases
TCAAGCCTTGCGCTTATGAGAAACAAGGTTTAATTGATCACGCTATTGGTTCTTATAGGGTTTTAGATGGTAAAATAAGT
GAGTCTTATTATAAGATTAT

Product: ATP-dependent RNA helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MKLRLRKHMRLVENMLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSR
VIHVLPYRAIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLAALEVLRDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNADDFKIDRK
IYVNVLENDEISITEEKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIE
AGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYDEREVKETVERVRELKTIDENLLIERDY
TEVIDSILAKDLSVIDNSVFVDSKKVKSIYEKICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNG
NVKLYNKKCLQLEMLKNDILGVRIQDYNSEIGGVY

Sequences:

>Translated_515_residues
MKLRLRKHMRLVENMLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSR
VIHVLPYRAIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLAALEVLRDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNADDFKIDRK
IYVNVLENDEISITEEKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIE
AGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYDEREVKETVERVRELKTIDENLLIERDY
TEVIDSILAKDLSVIDNSVFVDSKKVKSIYEKICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNG
NVKLYNKKCLQLEMLKNDILGVRIQDYNSEIGGVY
>Mature_515_residues
MKLRLRKHMRLVENMLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSR
VIHVLPYRAIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLAALEVLRDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNADDFKIDRK
IYVNVLENDEISITEEKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDRIDKVNKINEAKLVVSTQVIE
AGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEGEVYIFPFSGKVYDEREVKETVERVRELKTIDENLLIERDY
TEVIDSILAKDLSVIDNSVFVDSKKVKSIYEKICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNG
NVKLYNKKCLQLEMLKNDILGVRIQDYNSEIGGVY

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 57996; Mature: 57996

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRLRKHMRLVENMLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEEECCCCCCH
TTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
DSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLL
CCCCEEEEECHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHEEHHHHEE
GEDGKSLGAGLAALEVLRDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNADDFKIDRK
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCEECCE
IYVNVLENDEISITEEKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDR
EEEEEECCCCCEEEHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHH
IDKVNKINEAKLVVSTQVIEAGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEG
HHHHHCCCCCEEEEEHHHHHHCCCCCEEEEEECCCCCHHHHHHCCHHHHCCCCCCCEECC
EVYIFPFSGKVYDEREVKETVERVRELKTIDENLLIERDYTEVIDSILAKDLSVIDNSVF
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHCCCCE
VDSKKVKSIYEKICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNG
ECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
NVKLYNKKCLQLEMLKNDILGVRIQDYNSEIGGVY
CEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKLRLRKHMRLVENMLSLADFYNDFITRHGFEERKGIEETLLNLENGHSVILKAPTGYGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEEECCCCCCH
TTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
DSPFFMKKVNVTTLDTFILNLFKLPTVDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLL
CCCCEEEEECHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHEEHHHHEE
GEDGKSLGAGLAALEVLRDAGVPIVVTSATIDKGLERVLMNKLGKNVKVVNADDFKIDRK
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCEECCE
IYVNVLENDEISITEEKVKEGKRVLLVYNTRMGAIEAYKKLKGRGLSPILIHSKFSKKDR
EEEEEECCCCCEEEHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCHHH
IDKVNKINEAKLVVSTQVIEAGIDTSFDVLITEASPSHNLIQRAGRVARYGKGGRGKLEG
HHHHHCCCCCEEEEEHHHHHHCCCCCEEEEEECCCCCHHHHHHCCHHHHCCCCCCCEECC
EVYIFPFSGKVYDEREVKETVERVRELKTIDENLLIERDYTEVIDSILAKDLSVIDNSVF
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHEEECCHHHHHHHHHHHHHHHHCCCCE
VDSKKVKSIYEKICSITRNASIILGFPPNSNDVNDAIPLTEEEAIKIIESKGSSAFVGNG
ECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
NVKLYNKKCLQLEMLKNDILGVRIQDYNSEIGGVY
CEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]