Click here to switch to the map view.

The map label for this gene is 15898604

Identifier: 15898604

GI number: 15898604

Start: 1634300

End: 1634713

Strand: Direct

Name: 15898604

Synonym: SSO1804

Alternate gene names: NA

Gene position: 1634300-1634713 (Clockwise)

Preceding gene: 15898603

Following gene: 15898605

Centisome position: 54.62

GC content: 43.48

Gene sequence:

>414_bases
ATGGGTTATACTACTTCCAAGCTCAAGAGCTTCACAGCCTTTAGGAAGTATAAGGGTTGGGGTAGGAAGCACGGTAAGTC
CTACTTCGGGTTTAAGGTCTGTAATCTTGTGGAAAGGAGGACTAATTTCGTTAGGGACTTCAAGGTTGGATTGGCTAATT
TGAGTGATCTAGCCTTTTCATTTGATAACGTTAAGTTAATGGCTGATAGGGCTTGGATTTTTAGGGAGGACGTCTTAGTT
AAGGGTGTTGGTAGTGCTGGACTTCCGGTTGAGGGTAGTGGTGTTGAGATTAGGGAAGGTAAGGCTTCGTCTACAACCTT
AAGGGGAGTGGTTATGGAGGTATTCTTCCTTAACCTCTATCGTGATCTCGAAATTCTTTCGACGAGGATTAGGACGAAGG
TACTCGTTAATTAA

Upstream 100 bases:

>100_bases
TTACCCCAGGGAAAAGAGGAGTCTTTCCAAAACCGGTTCTTGAGAAAGATTCTCCCCTTGACCTTTAAGGAGATGGGGTT
CAAATGACGTTTTTCTCCTC

Downstream 100 bases:

>100_bases
CGAGGTTCGTTTACGTGTTTACTTGTTGTTATGGCAAATTTTATTGCAAAATTGTACAATTATCTGTATTTCCCCTTATT
AATACATATTATATTATTTT

Product: second ORF in transposon ISC1212

Products: NA

Alternate protein names: Second ORF In Transposon ISC; Partial Transposase In ISC

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MGYTTSKLKSFTAFRKYKGWGRKHGKSYFGFKVCNLVERRTNFVRDFKVGLANLSDLAFSFDNVKLMADRAWIFREDVLV
KGVGSAGLPVEGSGVEIREGKASSTTLRGVVMEVFFLNLYRDLEILSTRIRTKVLVN

Sequences:

>Translated_137_residues
MGYTTSKLKSFTAFRKYKGWGRKHGKSYFGFKVCNLVERRTNFVRDFKVGLANLSDLAFSFDNVKLMADRAWIFREDVLV
KGVGSAGLPVEGSGVEIREGKASSTTLRGVVMEVFFLNLYRDLEILSTRIRTKVLVN
>Mature_136_residues
GYTTSKLKSFTAFRKYKGWGRKHGKSYFGFKVCNLVERRTNFVRDFKVGLANLSDLAFSFDNVKLMADRAWIFREDVLVK
GVGSAGLPVEGSGVEIREGKASSTTLRGVVMEVFFLNLYRDLEILSTRIRTKVLVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15527; Mature: 15396

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYTTSKLKSFTAFRKYKGWGRKHGKSYFGFKVCNLVERRTNFVRDFKVGLANLSDLAFS
CCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FDNVKLMADRAWIFREDVLVKGVGSAGLPVEGSGVEIREGKASSTTLRGVVMEVFFLNLY
CCCEEEEEHHHHHHHHHHHEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
RDLEILSTRIRTKVLVN
HHHHHHHHHHHHHEECC
>Mature Secondary Structure 
GYTTSKLKSFTAFRKYKGWGRKHGKSYFGFKVCNLVERRTNFVRDFKVGLANLSDLAFS
CCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FDNVKLMADRAWIFREDVLVKGVGSAGLPVEGSGVEIREGKASSTTLRGVVMEVFFLNLY
CCCEEEEEHHHHHHHHHHHEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
RDLEILSTRIRTKVLVN
HHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA