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The map label for this gene is ygcU [H]

Identifier: 15898358

GI number: 15898358

Start: 1381827

End: 1383182

Strand: Direct

Name: ygcU [H]

Synonym: SSO1531

Alternate gene names: 15898358

Gene position: 1381827-1383182 (Clockwise)

Preceding gene: 15898357

Following gene: 15898360

Centisome position: 46.18

GC content: 35.77

Gene sequence:

>1356_bases
ATGCAGGAGTTTATAAATGAAATTCAGAGGAATTTTTCAAATTGCGTAGTGGAAGACTTAGATAAGTATAAAAGGGACTG
GACACCACTCTTAATTCTAGAAGAACATTTAGGAAAAAATTTAGGAAAACCGTTGTTAGTTCTCTCTCCATCAACTACCG
AGGAGGTTTCAAATATTGTTAAGTTGGCTAATAAGTATTATGTCTGCATCGTTCCTTACGGAGGAGGTTCTAGCGTAGTG
GGTGGGTCTTATCATAATAATTGCGTAATCCTTGATTTATCTAAACTAAACAGAATAATAGAGTTCAATGAGGAAGACCT
AAGCGTAACAGTTGAGGTAGGAATAAAAATTAAGGATCTTGAAGAATGGTTAAATAAAAGAGGATATACTCTGGATTATC
ATCCTCAATCCTTTTATCTAGCTACCATAGGTGGGGCTATAGCTCATAAAGGATCTGGATCACATAGTAGTAGTAACATA
GAGAATTTAATATTGTGGTTAGAAGTGATTTTGCCTAACGGTAAAGCAGTTAAAGTCGGTAGTTCCATAAGAACTTCCAT
GAGTCCAGATCTTGTAAGGTTATTTATAGGCTCCGAGGGAACTTTAGGAGTAATAACTAAGGCTAAACTGAGAATATTCC
CTCTTGCACCATATCATACTGACCTTTCCTTTCTCTTTCCTAATTTTCATAATGCAATAAAGTTTACTAGGGAATATGTT
TTGAGGACCTCTCCTCCACATAGGATAGTAGTTCACGATAAGGAAAGCAGTGAAATGATGTTGAATATCCCTTATAATAT
TGCATTAATAAGAGTTAGGGGATATGACGAAGATTTAGTTAACGTGAATGAGAAGATAATTAGACAGCTTGCTATGAGAC
ATAACGCAAATGAGGGCGACAGAAGTCTGATAAGAAGCTGGAGAGAGGTCTTTGCTAGAAAGTATGAAGAGCAAATGACT
AAGATAATTTCACAAGGTTTATGGAATGACACATTAGATTTAGGTGCTACTTGGAGTGCGATGCCTAAGCTTTATGATAA
GCTAAAGGAATCCTTAAACTCCATGAAAGGTATTAAAAATGTTCTGTCCAGAGTGACTCATGTCTATACTAACGGTGCCT
CACTATATAACGTGGTGGTTATGGAACAAGACCTTGAGTTATTAAAAAGAGTTTGGGAGACTGCTGCTAGAGTTATAATG
CAATTAGGTGGTACAATTTCCCACCATCATGGAGTTGGCATTTTAAAGAAAAATTGGGTTAAGGAAGAATTAGGCGAGCA
ATACGACTTATTGCTTCTAATTAAAAGAATGATTGATAGTAATAACATAATGAATCCAGGTAAAGTGTTTTCATAA

Upstream 100 bases:

>100_bases
TAAAACGAAAATAATAGTGGCTCAGCACAGAAATATTCAATAGATCAACTATGAATCACTGGCCGAAAAAATTATTAATG
TTCTTCAAGATTATGTTTTA

Downstream 100 bases:

>100_bases
ATTTCTTTTTCTCTAAATCATTATTTTATTAGCCTTAATATTAACATCCATAACTGCGATACCTTTCATATTTTTTTAAA
TTATATTAATTTTAGATATT

Product: alkyldihydroxyacetonephosphate synthase

Products: alkyl-glycerone 3-phosphate; long-chain acid anion

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MQEFINEIQRNFSNCVVEDLDKYKRDWTPLLILEEHLGKNLGKPLLVLSPSTTEEVSNIVKLANKYYVCIVPYGGGSSVV
GGSYHNNCVILDLSKLNRIIEFNEEDLSVTVEVGIKIKDLEEWLNKRGYTLDYHPQSFYLATIGGAIAHKGSGSHSSSNI
ENLILWLEVILPNGKAVKVGSSIRTSMSPDLVRLFIGSEGTLGVITKAKLRIFPLAPYHTDLSFLFPNFHNAIKFTREYV
LRTSPPHRIVVHDKESSEMMLNIPYNIALIRVRGYDEDLVNVNEKIIRQLAMRHNANEGDRSLIRSWREVFARKYEEQMT
KIISQGLWNDTLDLGATWSAMPKLYDKLKESLNSMKGIKNVLSRVTHVYTNGASLYNVVVMEQDLELLKRVWETAARVIM
QLGGTISHHHGVGILKKNWVKEELGEQYDLLLLIKRMIDSNNIMNPGKVFS

Sequences:

>Translated_451_residues
MQEFINEIQRNFSNCVVEDLDKYKRDWTPLLILEEHLGKNLGKPLLVLSPSTTEEVSNIVKLANKYYVCIVPYGGGSSVV
GGSYHNNCVILDLSKLNRIIEFNEEDLSVTVEVGIKIKDLEEWLNKRGYTLDYHPQSFYLATIGGAIAHKGSGSHSSSNI
ENLILWLEVILPNGKAVKVGSSIRTSMSPDLVRLFIGSEGTLGVITKAKLRIFPLAPYHTDLSFLFPNFHNAIKFTREYV
LRTSPPHRIVVHDKESSEMMLNIPYNIALIRVRGYDEDLVNVNEKIIRQLAMRHNANEGDRSLIRSWREVFARKYEEQMT
KIISQGLWNDTLDLGATWSAMPKLYDKLKESLNSMKGIKNVLSRVTHVYTNGASLYNVVVMEQDLELLKRVWETAARVIM
QLGGTISHHHGVGILKKNWVKEELGEQYDLLLLIKRMIDSNNIMNPGKVFS
>Mature_451_residues
MQEFINEIQRNFSNCVVEDLDKYKRDWTPLLILEEHLGKNLGKPLLVLSPSTTEEVSNIVKLANKYYVCIVPYGGGSSVV
GGSYHNNCVILDLSKLNRIIEFNEEDLSVTVEVGIKIKDLEEWLNKRGYTLDYHPQSFYLATIGGAIAHKGSGSHSSSNI
ENLILWLEVILPNGKAVKVGSSIRTSMSPDLVRLFIGSEGTLGVITKAKLRIFPLAPYHTDLSFLFPNFHNAIKFTREYV
LRTSPPHRIVVHDKESSEMMLNIPYNIALIRVRGYDEDLVNVNEKIIRQLAMRHNANEGDRSLIRSWREVFARKYEEQMT
KIISQGLWNDTLDLGATWSAMPKLYDKLKESLNSMKGIKNVLSRVTHVYTNGASLYNVVVMEQDLELLKRVWETAARVIM
QLGGTISHHHGVGILKKNWVKEELGEQYDLLLLIKRMIDSNNIMNPGKVFS

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=456, Percent_Identity=28.2894736842105, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI37595756, Length=432, Percent_Identity=29.3981481481481, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI37595754, Length=455, Percent_Identity=27.9120879120879, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI119964728, Length=194, Percent_Identity=28.8659793814433, Blast_Score=86, Evalue=1e-16,
Organism=Escherichia coli, GI48994907, Length=430, Percent_Identity=26.046511627907, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1789351, Length=434, Percent_Identity=23.5023041474654, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17556096, Length=450, Percent_Identity=27.7777777777778, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71992373, Length=428, Percent_Identity=26.1682242990654, Blast_Score=121, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI71992381, Length=427, Percent_Identity=25.5269320843091, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71992392, Length=369, Percent_Identity=25.4742547425474, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17534361, Length=465, Percent_Identity=24.7311827956989, Blast_Score=93, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320027, Length=443, Percent_Identity=27.313769751693, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6320023, Length=459, Percent_Identity=24.6187363834423, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320764, Length=467, Percent_Identity=22.9122055674518, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24653753, Length=459, Percent_Identity=28.7581699346405, Blast_Score=178, Evalue=6e-45,
Organism=Drosophila melanogaster, GI18921117, Length=248, Percent_Identity=27.0161290322581, Blast_Score=86, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24639277, Length=248, Percent_Identity=27.0161290322581, Blast_Score=86, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24639275, Length=248, Percent_Identity=27.0161290322581, Blast_Score=86, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: 2.5.1.26

Molecular weight: Translated: 51256; Mature: 51256

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEFINEIQRNFSNCVVEDLDKYKRDWTPLLILEEHLGKNLGKPLLVLSPSTTEEVSNIV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCEEEECCCCHHHHHHHH
KLANKYYVCIVPYGGGSSVVGGSYHNNCVILDLSKLNRIIEFNEEDLSVTVEVGIKIKDL
HHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECEEEEHH
EEWLNKRGYTLDYHPQSFYLATIGGAIAHKGSGSHSSSNIENLILWLEVILPNGKAVKVG
HHHHHCCCCEEEECCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHEECCCCEEEEC
SSIRTSMSPDLVRLFIGSEGTLGVITKAKLRIFPLAPYHTDLSFLFPNFHNAIKFTREYV
CHHHCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHH
LRTSPPHRIVVHDKESSEMMLNIPYNIALIRVRGYDEDLVNVNEKIIRQLAMRHNANEGD
HCCCCCCEEEEECCCCCCEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCH
RSLIRSWREVFARKYEEQMTKIISQGLWNDTLDLGATWSAMPKLYDKLKESLNSMKGIKN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VLSRVTHVYTNGASLYNVVVMEQDLELLKRVWETAARVIMQLGGTISHHHGVGILKKNWV
HHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
KEELGEQYDLLLLIKRMIDSNNIMNPGKVFS
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQEFINEIQRNFSNCVVEDLDKYKRDWTPLLILEEHLGKNLGKPLLVLSPSTTEEVSNIV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCEEEECCCCHHHHHHHH
KLANKYYVCIVPYGGGSSVVGGSYHNNCVILDLSKLNRIIEFNEEDLSVTVEVGIKIKDL
HHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECEEEEHH
EEWLNKRGYTLDYHPQSFYLATIGGAIAHKGSGSHSSSNIENLILWLEVILPNGKAVKVG
HHHHHCCCCEEEECCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHEECCCCEEEEC
SSIRTSMSPDLVRLFIGSEGTLGVITKAKLRIFPLAPYHTDLSFLFPNFHNAIKFTREYV
CHHHCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHH
LRTSPPHRIVVHDKESSEMMLNIPYNIALIRVRGYDEDLVNVNEKIIRQLAMRHNANEGD
HCCCCCCEEEEECCCCCCEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCH
RSLIRSWREVFARKYEEQMTKIISQGLWNDTLDLGATWSAMPKLYDKLKESLNSMKGIKN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VLSRVTHVYTNGASLYNVVVMEQDLELLKRVWETAARVIMQLGGTISHHHGVGILKKNWV
HHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
KEELGEQYDLLLLIKRMIDSNNIMNPGKVFS
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 1-acyl-glycerone 3-phosphate; long-chain alcohol

Specific reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = an alkyl-glycerone 3-phosphate + a long-chain acid anion

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]