Click here to switch to the map view.

The map label for this gene is 15898304

Identifier: 15898304

GI number: 15898304

Start: 1333044

End: 1333433

Strand: Direct

Name: 15898304

Synonym: SSO1472

Alternate gene names: NA

Gene position: 1333044-1333433 (Clockwise)

Preceding gene: 15898297

Following gene: 15898305

Centisome position: 44.55

GC content: 42.31

Gene sequence:

>390_bases
ATGCAAACCATGATATTACCCAAAACGGAGCTGAAGTCCCTCGCTATAACTTTAGCAACAAACAATATTAACGTTATCTC
TCAAGATCTAGACCCGGAAATAGTGAAAGCAGCACCATCCTTGCTAACCGGAAACAGAGGAAAATACTACTTGAAGGTAG
TAAGACGAGGCGAGAAAGTAATTAGTAAAGGTCAGAGAACCTTCAAGTTCTACCCAATCTACAGAGAAGTAAAGGGAGAG
ATCAACGTAGTCGCTGTAGATGAGACCGGATTAACCGTGGGAGAAAAGGAACAAGAAAAAGCAGAGGGCTTTCTACTCTA
CAACTTGGAAGAGAAAAGGAGTAAAGATGAGATCCTTGGACCTCGTATATCCCTTAAGGTACCCCTCTAG

Upstream 100 bases:

>100_bases
AAGAGTAATACCATTTGTCTAGTATTATCAATAGAGGAAAGTAGGTGGAAGGACGAGATGAACAAGAAAAGGTTAAAGCG
AGGGACTCCATAACTCCGTT

Downstream 100 bases:

>100_bases
TGGAGGTAGCAGATTTGAGAAGCGACAGTCCATCACAGTTCCTACTCAGGAGCGTGAGGGAAGTAAGCCAATACATGGAA
ATAGATTACGTTGTAGCTGA

Product: transposon ISC1439 Orf1

Products: NA

Alternate protein names: ORF1 In Transposon ISC; Transposon

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MQTMILPKTELKSLAITLATNNINVISQDLDPEIVKAAPSLLTGNRGKYYLKVVRRGEKVISKGQRTFKFYPIYREVKGE
INVVAVDETGLTVGEKEQEKAEGFLLYNLEEKRSKDEILGPRISLKVPL

Sequences:

>Translated_129_residues
MQTMILPKTELKSLAITLATNNINVISQDLDPEIVKAAPSLLTGNRGKYYLKVVRRGEKVISKGQRTFKFYPIYREVKGE
INVVAVDETGLTVGEKEQEKAEGFLLYNLEEKRSKDEILGPRISLKVPL
>Mature_129_residues
MQTMILPKTELKSLAITLATNNINVISQDLDPEIVKAAPSLLTGNRGKYYLKVVRRGEKVISKGQRTFKFYPIYREVKGE
INVVAVDETGLTVGEKEQEKAEGFLLYNLEEKRSKDEILGPRISLKVPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14535; Mature: 14535

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTMILPKTELKSLAITLATNNINVISQDLDPEIVKAAPSLLTGNRGKYYLKVVRRGEKV
CCCEECCCCCCCEEEEEEEECCCEEEECCCCHHHHHHCCHHHCCCCCCEEEEEEHHHHHH
ISKGQRTFKFYPIYREVKGEINVVAVDETGLTVGEKEQEKAEGFLLYNLEEKRSKDEILG
HHCCCCEEEEEEEHEECCCCEEEEEECCCCCCCCCCCHHHCCCEEEEECHHHCCCCHHCC
PRISLKVPL
CEEEEEECC
>Mature Secondary Structure
MQTMILPKTELKSLAITLATNNINVISQDLDPEIVKAAPSLLTGNRGKYYLKVVRRGEKV
CCCEECCCCCCCEEEEEEEECCCEEEECCCCHHHHHHCCHHHCCCCCCEEEEEEHHHHHH
ISKGQRTFKFYPIYREVKGEINVVAVDETGLTVGEKEQEKAEGFLLYNLEEKRSKDEILG
HHCCCCEEEEEEEHEECCCCEEEEEECCCCCCCCCCCHHHCCCEEEEECHHHCCCCHHCC
PRISLKVPL
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA