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The map label for this gene is 15898042

Identifier: 15898042

GI number: 15898042

Start: 1032029

End: 1033321

Strand: Direct

Name: 15898042

Synonym: SSO1188

Alternate gene names: NA

Gene position: 1032029-1033321 (Clockwise)

Preceding gene: 15898041

Following gene: 15898049

Centisome position: 34.49

GC content: 38.05

Gene sequence:

>1293_bases
ATGAGATATGATGTAATAATTATTGGTGCTGGCCATAATGGTTTAGTTTCCTCAATATATTTAGCTCAGAAAGGCCTTAA
GGTATTAGTTATCGAGGCCAGGGATAGACCCGGAGGAATGGCTGACACTGCAGAATATAAGGGGGTTAAATACAGTAGAG
CATCTTATGTATTAGGACTATTTCCTAAAAGAATCCAAGAGGAATTAGGGATAGTTTTTCCCACGATTGACTCAGATATT
GCAGATGTTTTTGTCACGGAAGAGGGAAAGGTTGTGAATATATGGAGAAATAAAGAGAAGAGACTCGAGGAACTTAAGCG
CCTAGGTCAATACAAATACCCTAAAATGGAGGAGCTACTGTTCAAGATTAAGGAGAAGATTGAACAAGAGATGCAATACG
TTATCAAACCACCGTCATTTGAGGATTTCAAGAAAGCAGTAGAAGGAACTGAACTTGAAATATTTACTCAACCATCCAGA
AAGTTTCTAAATGAATACTTAGATGAGGAATTCCAGCCCTATTTCTCATATGGATTTATGTATGATTTGCCAGCGTACGT
TGTAGCATATTATTTTAGTCTAGATTGGAAGATAGTGAAAGGAGGAATGGGAAAAGTAGGAGAAATGTTAATGAGTAGAG
CTAGACAATTAGGCGTAGATTTCCTATTCAATACAAAGATAAGTGAGATAGTTATCAAAGATAATGTGGCTACTGGTGTG
AGAACTGACAATGATAAAATTGTTGAGAGTAAAATAGTGATCAATGCAGCAAGCCCGGTTCTACTGAACAAATTAACCAA
CGGACTGCTTAAAGTTCACCATCCAGAGTTTAGACCAAGATGGAAGAGGGATACTTTAGTGCTAAGGGAATTACCAAATC
TACCAGATTATATGAGAAGCCATTTAGATACGTTATTTACGTTACCTATAGGCGAAGTTACTATTCCTTCTGCTGTTGAT
AATAGCCTAGGAGGTCATGTGATGACAATAATGGGTAGTTATGAAGAGGCTAAAGAGTTCTTCCCAGATTTGGAAAAGAA
GGTGATATATATTGATAGACTAGATGCATATAAGCTCGAGAGAGAATATAATGCCCCCTACGGCGATATGAATCATATGC
CAATGTACACAGAATACTTATTCGATGGCAGACCGGTTAAAGGTTGGGGATACGCTACTCCAATTAAGAACCTCTATATA
ACAGGCTCAGGGACTTACCCAGGAGGACAAGTTACTGGAGTACCGGGTAGAAATGCTGCAATGAAGATTATGACTGATTT
GGGTATTGAATAA

Upstream 100 bases:

>100_bases
AGTCAAGGAAGTAAATGATCGAAAGCTTTTCATCTAAGGTGTCTAAGAAAACTGCTTCATGATGCAACTTTAATTTGTTG
CTCAACAATATAAGTGTGCT

Downstream 100 bases:

>100_bases
TGCAATTAACTATAAGATCACTCGAATAGAAGTCTAGAGGATTTTCCTAGAAATATTGAAGAAGTATAATGTAGAGATAT
TAATAAATGTAATGAGTTGG

Product: phytoene dehydrogenase related protein

Products: NA

Alternate protein names: Phytoene Dehydrogenase; Amine Oxidase; Phytoene Dehydrogenase Related Protein; Dehydrogenase/Oxidoreductase; Glucose-Inhibited Division Protein A; Oxidoreductase; Oxidoreductase Family Protein

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGLFPKRIQEELGIVFPTIDSDI
ADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELLFKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSR
KFLNEYLDEEFQPYFSYGFMYDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGV
RTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRSHLDTLFTLPIGEVTIPSAVD
NSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLEREYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYI
TGSGTYPGGQVTGVPGRNAAMKIMTDLGIE

Sequences:

>Translated_430_residues
MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGLFPKRIQEELGIVFPTIDSDI
ADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELLFKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSR
KFLNEYLDEEFQPYFSYGFMYDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGV
RTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRSHLDTLFTLPIGEVTIPSAVD
NSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLEREYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYI
TGSGTYPGGQVTGVPGRNAAMKIMTDLGIE
>Mature_430_residues
MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGLFPKRIQEELGIVFPTIDSDI
ADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELLFKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSR
KFLNEYLDEEFQPYFSYGFMYDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGV
RTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRSHLDTLFTLPIGEVTIPSAVD
NSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLEREYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYI
TGSGTYPGGQVTGVPGRNAAMKIMTDLGIE

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=545, Percent_Identity=25.3211009174312, Blast_Score=127, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17540238, Length=527, Percent_Identity=27.7039848197343, Blast_Score=155, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49142; Mature: 49142

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGL
CCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCEECCHHHHHHH
FPKRIQEELGIVFPTIDSDIADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELL
CHHHHHHHHCEEEECCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHH
FKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSRKFLNEYLDEEFQPYFSYGFM
HHHHHHHHHHHHHEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHCCCH
YDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGV
HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCE
RTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRS
ECCCCCEEEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHCCCCHHHHHH
HLDTLFTLPIGEVTIPSAVDNSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLE
HHHHEEECCCCCEECCHHHCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEECCCHHHHH
REYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYITGSGTYPGGQVTGVPGRNAA
HHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCHH
MKIMTDLGIE
HHHHHHCCCC
>Mature Secondary Structure
MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGL
CCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCEECCHHHHHHH
FPKRIQEELGIVFPTIDSDIADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELL
CHHHHHHHHCEEEECCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHH
FKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSRKFLNEYLDEEFQPYFSYGFM
HHHHHHHHHHHHHEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHCCCH
YDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGV
HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCE
RTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRS
ECCCCCEEEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHCCCCHHHHHH
HLDTLFTLPIGEVTIPSAVDNSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLE
HHHHEEECCCCCEECCHHHCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEECCCHHHHH
REYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYITGSGTYPGGQVTGVPGRNAA
HHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCHH
MKIMTDLGIE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA