Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 15898036

GI number: 15898036

Start: 1024488

End: 1025756

Strand: Direct

Name: ydcM [C]

Synonym: SSO1182

Alternate gene names: 15898036

Gene position: 1024488-1025756 (Clockwise)

Preceding gene: 15898035

Following gene: 15898038

Centisome position: 34.24

GC content: 42.55

Gene sequence:

>1269_bases
GTGCTGAAGAACTTAAGAATTGGAAAATTTGAACCGGAAGAGGAATACGTGCACTTCACGTACTCCATCAAGAATAGTGA
GAGGGAGAAGAGCAAAGAGTTAATTAAAGAATACAGAACACTACTACAGAAAGCAATTGACTACCTGTGGAATTTAACGA
AAATACAAGTAAGAAAAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAAGGAAGTATACAAACCACTTAGGGAA
GAGTTGGAGAAGATCAACCACCTTGCGTCACATTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTG
GAGGAAAAGGGCCATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTGAAGAAGGCTTACGTTAGGATAAAGACGACTC
TGAGGAAGGTTGTGGGGGAAAGCGTTAGAATAACGGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAAGTCATGG
TTCTCAAGAAGGGTTAGGGAGTTGGAACTCGGCGAACCTATAATTAAGGAGGAGAAAGTGTATTTGTCATTTCGTTACAA
GTTACCTTGGGTAACTCCATTAAACTTTCTGGCAATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAAT
TCGTTACAATCTCTCTGAAGCAGTTATATTCCATGAAGTACTCCATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCA
TCAAAGTACACGAAGAGGGGGAGAGAGTTGATGAGGAAGTATTCGCATAGGGAGAGGAATAGCGTTCTGGACTTCGTTCG
TAAATTTGTAAATGCGTTACTAGACCTATATCCCATAACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTA
AGGATGCTAATGACTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACATAGAGTGTTGAGGTATAAGGCT
CCGCTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACACCTCACCTCGAGGTCTTGCCCCAGATGTGGGTTTGTATCTCG
AAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGGCAATTGAATGCTTCACTGAATATTTATC
TCAAGATGTGCGGTTTTCCTCACATCCGTGATATTCCAAGGGTGTGGGTTGGGGTTATTCCGCTAATGGGGCGGAGAGGG
ATGAACGTCCGCGACTTCGGTGAAGCCCAAGGGCTGAGGATTGATATTGAATATCATGAAATCCCATGA

Upstream 100 bases:

>100_bases
AAAGAGGAAGAATTGGTCGAAGACTTAGTCTCAATACTAGTCTCGCTCAGCGGGAAACTGTATGGTATGAGAAGTCATGA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCAATTACTTGTAATGGTTTCCTACCGAGTTTATCTATTAATGTGAGAGCTATAAGTCCACCTGGAATAG
TAAAAGCTCCCTCTATCAGT

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFA
SKYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAVEKLNKESMFKDANDSLSRKISRTVWRSIHRVLRYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIEYHEIP

Sequences:

>Translated_422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFA
SKYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAVEKLNKESMFKDANDSLSRKISRTVWRSIHRVLRYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIEYHEIP
>Mature_422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFA
SKYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAVEKLNKESMFKDANDSLSRKISRTVWRSIHRVLRYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIEYHEIP

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50137; Mature: 50137

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEE
YLSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFA
EEEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAVEKLNKESMFKDANDSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHH
SRKISRTVWRSIHRVLRYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNVRDFGEAQGLRIDIEYHE
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC
IP
CC
>Mature Secondary Structure
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEE
YLSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFA
EEEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAVEKLNKESMFKDANDSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHH
SRKISRTVWRSIHRVLRYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNVRDFGEAQGLRIDIEYHE
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC
IP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]