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The map label for this gene is lrs14

Identifier: 15897970

GI number: 15897970

Start: 957883

End: 958260

Strand: Direct

Name: lrs14

Synonym: SSO1108

Alternate gene names: 15897970

Gene position: 957883-958260 (Clockwise)

Preceding gene: 15897969

Following gene: 15897971

Centisome position: 32.01

GC content: 35.71

Gene sequence:

>378_bases
ATGCAAGTAGAGAATATAAGAGTTAGGCTCCCATCTGGAAAAGAAGTTGGATTAGTAGACGCACTAAATTTCTGCTATGA
TATTTCAGATACGGACTTCCAGGTGTTAAAGACATTACTAAATAGTGGACCAAAGACTGAAGACGAACTAGCTGAAATGC
TTCATTTAAGTAAGGCTTCAATAAATAGATCGGTAAATAAGTTAGTTTCCTTGGGTTTTGTAGATAGGGTAAAGGACTCA
TCATCGAAGGGAGGTAGGCCAAGATATATATACAAACCTATAGATGCGGATAGAATTACCACGAAGATTTCAAATGATTT
CAAATATTGTGCTGACTTATTCTCTAGCGTGATACCACAAGAATTGAAAGAAAAGTAA

Upstream 100 bases:

>100_bases
GAATAAGGGTTTATGGACGTAGAATTTCCAAAAAATCACGTTAACTTTTTTTGCTAAAATAAGGAAAGATTTATATATAC
GTTTTTTCTGATATATTCAT

Downstream 100 bases:

>100_bases
GTAAATTTATTTTAATCTTCGTTTTTCTTACATTTAAACGTAAATCTATCTGGTTCTCTTAAAAAAGCTAACATACATAT
TTCGGTGTCGAAATAATACT

Product: transcriptional regulator Lrs14

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MQVENIRVRLPSGKEVGLVDALNFCYDISDTDFQVLKTLLNSGPKTEDELAEMLHLSKASINRSVNKLVSLGFVDRVKDS
SSKGGRPRYIYKPIDADRITTKISNDFKYCADLFSSVIPQELKEK

Sequences:

>Translated_125_residues
MQVENIRVRLPSGKEVGLVDALNFCYDISDTDFQVLKTLLNSGPKTEDELAEMLHLSKASINRSVNKLVSLGFVDRVKDS
SSKGGRPRYIYKPIDADRITTKISNDFKYCADLFSSVIPQELKEK
>Mature_125_residues
MQVENIRVRLPSGKEVGLVDALNFCYDISDTDFQVLKTLLNSGPKTEDELAEMLHLSKASINRSVNKLVSLGFVDRVKDS
SSKGGRPRYIYKPIDADRITTKISNDFKYCADLFSSVIPQELKEK

Specific function: Acts in transcription regulation. Binds to multiple sequences in its own promoter

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LRS14_SULSO (O93774)

Other databases:

- EMBL:   AF098294
- EMBL:   AE006641
- PIR:   F90263
- RefSeq:   NP_342575.1
- ProteinModelPortal:   O93774
- SMR:   O93774
- GeneID:   1454144
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO1108
- NMPDR:   fig|273057.1.peg.998
- HOGENOM:   HBG553280
- OMA:   DADRITT
- ProtClustDB:   CLSK802533
- BioCyc:   SSOL273057:SSO1108-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002831
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01978 TrmB

EC number: NA

Molecular weight: Translated: 14071; Mature: 14071

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVENIRVRLPSGKEVGLVDALNFCYDISDTDFQVLKTLLNSGPKTEDELAEMLHLSKAS
CCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
INRSVNKLVSLGFVDRVKDSSSKGGRPRYIYKPIDADRITTKISNDFKYCADLFSSVIPQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHH
ELKEK
HHHCC
>Mature Secondary Structure
MQVENIRVRLPSGKEVGLVDALNFCYDISDTDFQVLKTLLNSGPKTEDELAEMLHLSKAS
CCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
INRSVNKLVSLGFVDRVKDSSSKGGRPRYIYKPIDADRITTKISNDFKYCADLFSSVIPQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHH
ELKEK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10049378; 11427726