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The map label for this gene is rtcB [C]

Identifier: 15897845

GI number: 15897845

Start: 824180

End: 825628

Strand: Direct

Name: rtcB [C]

Synonym: SSO0966

Alternate gene names: 15897845

Gene position: 824180-825628 (Clockwise)

Preceding gene: 15897842

Following gene: 15897846

Centisome position: 27.54

GC content: 41.34

Gene sequence:

>1449_bases
ATGCAGATTAACATTACTAGAGTTAGCACATACGAGTGGCGTATTGATAAAGGCGCTCAAGAGTGTATGAAAGTTCCCGT
TACAATATTTGCAGATGACGTTCTAATTGAAAAAATGAAACAAGATATGACATTAAGACAAGCAACTAACGTAGCTTGTT
TACCCGGTGTCCAAGAGTCAATTTACGTTTTACCAGATGGTCATCAAGGTTACGGTTTTCCTATAGGCGGTATAGCAGCT
ACTGCGATCGAGGAAGGAGGAGTGGTAAGTCCTGGAGGTATAGGATATGACATAAATTGTGGTGTCAGATTACTCAGAAC
TAATTTAGACTATAAAGATGTAAAGCCAAAATTAGCTCAGTTGGTTGAGGAGCTGCATAGAAACGTGCCGAGCGGTGTAG
GAAGTGAGGGTAAAGTAAAATTGACATATCAGCAATTAGATCAAGTATTAGCGGAAGGAGTTGCGTGGGCGGTTGATAAG
GGCTTTGGATGGAAAGAAGACATGAATCACATGGAACAACGTGGTAGCTGGGAGCTAGCCGATCCTTCAAAAGTAAGTCC
GATAGCAAAACAAAGAGGTGCCTCTCAGTTAGGAACTTTAGGAGCTGGTAATCATTTCTTGGAAATTCAAGTTGTTGATA
AGATATTTGATCCCCAAATTGCTAAAGCAATAGGGGTAGATCACGAAGGTCAAGTAATGGTTATGGTTCATACGGGTTCA
AGAGGTTTAGGTCATCAAGTAGCTAGTGATTATTTACAGATAATGGAAAGAGCAATGAAGAAGTATAACATTCAATTGCC
AGATAGAGAACTAGCTGCAGTTCCCTTTGAGAGTAGAGAGGGTCAGGATTACTTTCATGCAATGGCATCTGGAGCTAATT
TTGCGTGGACGAATAGACAATTGATTACGCATTGGACGAGAGAGAGTTTCGGTAGAGTATTTGGTGTCGACCCAGAAAAA
TTAGATCTTAGCATAGTTTATGATGTAGCTCATAATATAGCTAAAATTGAGGAGTATGTAATTGGTGGAGAAAGGAAGAA
GGTATTAGTACATAGGAAAGGTGCTACTAGGGCTTTCCCGCCTGGTAGTCCGGAGATTCCCGCTGATCATAGAAATATTG
GCCAGATTGTTTTAATCCCAGGTAGTATGGGCACTGCTAGTTATGTTATGGCTGGAATACCAGAAGGTAGAAGGACATGG
TTTACTGCGCCTCATGGTGCTGGTAGGTGGATGTCTAGGGAAGCTGCAGTGAGAAATTACCCTGCTAACGTAGTAGTTGA
AACTTTAGCTGAAAAGGGTATAGTAGTAAGGGCTGCTACTAGAAGGGTAGTAGCTGAAGAAGCACCGGGAGCCTACAAAG
ATGTTGATAGGGTAGCTAAAGTTGCTCATGAAGTTAAAATTGCTAAATTAGTTATGCGATTAAGACCCATAGGGGTTACC
AAAGGATGA

Upstream 100 bases:

>100_bases
GTGAAAAAGCTGAAAAGAAAATTTAAAGTTTTTGAAATAAATACTCCGCCAATAGGTATAGTTTTATTTAGGCTAAGTAA
TATCTGTATTTGATTGAAAA

Downstream 100 bases:

>100_bases
TAAATAGAGAGGACTTGTTAAAAAACCCAGTTGAAGATATAACATTGAGTGACCTAAAGAAGTATAACGATATAGTTAGT
GTATTCGATAAGATATACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQESIYVLPDGHQGYGFPIGGIAA
TAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDK
GFGWKEDMNHMEQRGSWELADPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEK
LDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTW
FTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG

Sequences:

>Translated_482_residues
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQESIYVLPDGHQGYGFPIGGIAA
TAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDK
GFGWKEDMNHMEQRGSWELADPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEK
LDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTW
FTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG
>Mature_482_residues
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQESIYVLPDGHQGYGFPIGGIAA
TAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQLVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDK
GFGWKEDMNHMEQRGSWELADPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQLITHWTRESFGRVFGVDPEK
LDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFPPGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTW
FTAPHGAGRWMSREAAVRNYPANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=47.3684210526316, Blast_Score=464, Evalue=1e-131,
Organism=Escherichia coli, GI2367224, Length=440, Percent_Identity=28.8636363636364, Blast_Score=142, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=45.5465587044534, Blast_Score=432, Evalue=1e-121,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=46.7611336032389, Blast_Score=438, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53006; Mature: 53006

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
CEEEEEEEEEEEEEECCCHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
IYVLPDGHQGYGFPIGGIAATAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQ
EEEEECCCCCCCCCCCCHHHHHHCCCCEECCCCCCEECCCCEEEEECCCCHHHCCHHHHH
LVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQRGSWELA
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCC
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
CCCCCCHHHHHCCCHHHCCCCCCCEEEEEEEEHHHHCHHHHHHHCCCCCCCEEEEEECCC
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCEEECCCH
LITHWTRESFGRVFGVDPEKLDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFP
HHHHHHHHHCCCEECCCCCCEEHEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
CCCCCCCCCCCCCCEEEEECCCCCCHHHHEECCCCCCCEEEECCCCCCCCHHHHHHHHCC
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
CHHHHHHHHHHCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KG
CC
>Mature Secondary Structure
MQINITRVSTYEWRIDKGAQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
CEEEEEEEEEEEEEECCCHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
IYVLPDGHQGYGFPIGGIAATAIEEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQ
EEEEECCCCCCCCCCCCHHHHHHCCCCEECCCCCCEECCCCEEEEECCCCHHHCCHHHHH
LVEELHRNVPSGVGSEGKVKLTYQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQRGSWELA
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCC
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
CCCCCCHHHHHCCCHHHCCCCCCCEEEEEEEEHHHHCHHHHHHHCCCCCCCEEEEEECCC
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCEEECCCH
LITHWTRESFGRVFGVDPEKLDLSIVYDVAHNIAKIEEYVIGGERKKVLVHRKGATRAFP
HHHHHHHHHCCCEECCCCCCEEHEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
CCCCCCCCCCCCCCEEEEECCCCCCHHHHEECCCCCCCEEEECCCCCCCCHHHHHHHHCC
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
CHHHHHHHHHHCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]