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The map label for this gene is rps17p

Identifier: 15897615

GI number: 15897615

Start: 607438

End: 607782

Strand: Reverse

Name: rps17p

Synonym: SSO0709

Alternate gene names: 15897615

Gene position: 607782-607438 (Counterclockwise)

Preceding gene: 15897616

Following gene: 15897614

Centisome position: 20.31

GC content: 37.1

Gene sequence:

>345_bases
ATGGTATCTAAGGGAAAGACGGTAAAGGACCCGGGAATACCTAATATTACTATTCCCGAGAAGGTATGTGAAGATGAAGA
TTGTCCTTATCATGGATCATTGAGAGTTAGGGGTATAACATTAGAAGGAGTAATTGTAAAGTATAGAGGTACTAAAGCTG
CAGTTATAGAAAGGCAATACTTATACTATGACTCGAAGTATAAGAGATATGAAAGGAGGAGAAGTAGGATCCATGCCCAT
GTACCGCCATGTATTAATGTTAGAGAGGGAGATAAAGTTATAATAGGCGAATGTAGACCTCTTTCTAAATCTATAAGTTT
TGTTGTATTAGGCAAGGTGAGTTGA

Upstream 100 bases:

>100_bases
AGCTCATGGTATATTTGAGATAACTTTTAAAGGTAAGTCTTTTATAATAGCTGGCTATAAGCTGGTAAGAAAACCTTGGA
AAAGAATTTAGGTGGGTTAG

Downstream 100 bases:

>100_bases
AGTGTCAGAAAAGATTCAAGTTTTAGGATCCAGAAAAGGTTTAACGCCAGCTCTCCAACATTATTCGGTAGTTAACGTTG
CTGATAATAGTGGAGGAAAG

Product: 30S ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAH
VPPCINVREGDKVIIGECRPLSKSISFVVLGKVS

Sequences:

>Translated_114_residues
MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAH
VPPCINVREGDKVIIGECRPLSKSISFVVLGKVS
>Mature_114_residues
MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAH
VPPCINVREGDKVIIGECRPLSKSISFVVLGKVS

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family

Homologues:

Organism=Homo sapiens, GI4506681, Length=87, Percent_Identity=44.8275862068966, Blast_Score=86, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17542016, Length=87, Percent_Identity=45.9770114942529, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320228, Length=86, Percent_Identity=41.8604651162791, Blast_Score=81, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319522, Length=86, Percent_Identity=41.8604651162791, Blast_Score=81, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24652922, Length=87, Percent_Identity=44.8275862068966, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24652924, Length=87, Percent_Identity=44.8275862068966, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS17_SULSO (Q9UX98)

Other databases:

- EMBL:   Y18930
- EMBL:   AE006641
- PIR:   C90219
- RefSeq:   NP_342220.1
- ProteinModelPortal:   Q9UX98
- SMR:   Q9UX98
- GeneID:   1454977
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0709
- NMPDR:   fig|273057.1.peg.643
- HOGENOM:   HBG750455
- OMA:   KYNRYER
- PhylomeDB:   Q9UX98
- ProtClustDB:   PRK08572
- BioCyc:   SSOL273057:SSO0709-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01345_A
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- InterPro:   IPR019979
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10744
- PANTHER:   PTHR10744:SF3
- PRINTS:   PR00973
- ProDom:   PD001295
- TIGRFAMs:   TIGR03630

Pfam domain/function: PF00366 Ribosomal_S17; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 12962; Mature: 12962

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00056 RIBOSOMAL_S17

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQY
CCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEECEEEEEECCCEEEEEEEEE
LYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVLGKVS
EEECCHHHHHHHHHHCEEECCCCCCEECCCCEEEEECCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MVSKGKTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQY
CCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEECEEEEEECCCEEEEEEEEE
LYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVLGKVS
EEECCHHHHHHHHHHCEEECCCCCCEECCCCEEEEECCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726