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The map label for this gene is ygcF [H]

Identifier: 15897539

GI number: 15897539

Start: 540769

End: 541404

Strand: Reverse

Name: ygcF [H]

Synonym: SSO0624

Alternate gene names: 15897539

Gene position: 541404-540769 (Counterclockwise)

Preceding gene: 15897540

Following gene: 15897537

Centisome position: 18.09

GC content: 36.64

Gene sequence:

>636_bases
GTGGTACAAATGAAGTATCGCGTGATTGAAATCTTTACCTCTATCCAAGGTGAAGGGGAGGTTATCGGGATCCCTTCAAA
TTTCATTAGACTTGCTACGTGCAACTTAAGATGTGTATGGTGTGATACGAAATATTCGTGGGAAATTGGCACTGAGATGA
GTATAGATGAGATTATTGCAAAACTTGATAAGAAAATTAAAACTACCACGATAACTGGGGGCGAACCTTTACTCCAAAAC
ATATTACCACTTGCTAAGGAACTTAAGAGTATAGGGCATAAGATTGTGGTTGAGACAAACGGTACAATAAAGCCTTCAGA
GGAATTAAGGAAAATCATTGATATCTTTTCGGTTTCTCCTAAGCTTAGTAATTCTGGGCATAAGCTAAAATACGACTTCG
CAGATGATTGGGCTACATATTATAAGTTTGTTATAGTCTATCCAAATAAGGATATAGATGAGGTTGTAAAATTCGTCGAG
TCTCAGAGTATTAATCCACGCAAAGTTATCCTACAACCAGATGGAAATAGAAGCGATTATATAAATGCAATAAATGAAAT
AGTGCAAATTGTGTTAGATAGGGGTCTTCAATTTAGAGTTCTTCCCCAGCTCCATAGAATTATTGGAGCTAGATGA

Upstream 100 bases:

>100_bases
TTTCTTTTAAGTGAAGGAAACGAATGGCACGAAATAAGCGCTGAAAAGGGAATCGGTATAGATAAGTTAAAAGAGGAACT
TTTTAACTTGGTAAAAAGTA

Downstream 100 bases:

>100_bases
TAATAGGTCTTTTAATAGATTCATCTTTTGTTTTCCTCTTGCTAACACTTCATTACATACATTTACTAATGTTTTTATTT
TATCCTTGTCAACTCTCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MVQMKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRCVWCDTKYSWEIGTEMSIDEIIAKLDKKIKTTTITGGEPLLQN
ILPLAKELKSIGHKIVVETNGTIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVE
SQSINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR

Sequences:

>Translated_211_residues
MVQMKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRCVWCDTKYSWEIGTEMSIDEIIAKLDKKIKTTTITGGEPLLQN
ILPLAKELKSIGHKIVVETNGTIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVE
SQSINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR
>Mature_211_residues
MVQMKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRCVWCDTKYSWEIGTEMSIDEIIAKLDKKIKTTTITGGEPLLQN
ILPLAKELKSIGHKIVVETNGTIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVE
SQSINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=231, Percent_Identity=29.4372294372294, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24066; Mature: 24066

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQMKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRCVWCDTKYSWEIGTEMSIDEIIA
CCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECEEEEEECCCCCEECCCCCCHHHHHH
KLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIKPSEELRKIIDIFSVSP
HHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
KLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVESQSINPRKVILQPDGNRSDY
CCCCCCCEEEEECCCCHHEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHH
INAINEIVQIVLDRGLQFRVLPQLHRIIGAR
HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCC
>Mature Secondary Structure
MVQMKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRCVWCDTKYSWEIGTEMSIDEIIA
CCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECEEEEEECCCCCEECCCCCCHHHHHH
KLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIKPSEELRKIIDIFSVSP
HHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
KLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVESQSINPRKVILQPDGNRSDY
CCCCCCCEEEEECCCCHHEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHH
INAINEIVQIVLDRGLQFRVLPQLHRIIGAR
HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]