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The map label for this gene is sun-1 [H]

Identifier: 15897306

GI number: 15897306

Start: 315925

End: 316908

Strand: Direct

Name: sun-1 [H]

Synonym: SSO0371

Alternate gene names: 15897306

Gene position: 315925-316908 (Clockwise)

Preceding gene: 15897305

Following gene: 15897307

Centisome position: 10.56

GC content: 33.64

Gene sequence:

>984_bases
TTGAATGCCATAAGGAAGCCAAATCCTAGATTATACATTAGGGTTAATACTCTAAAGACCTCTGTAGAGAAAATACTGGA
AAGGCTTCCACATTTTAAGCCGGACGAAGATTTCAAAGAGGCAATTTACGTTGAGATAAAAGGGCCAAATGAAATTAACA
TTCATGAAAATAAGGTAATTGTAGATAAGAAAACTGCGGAAAGCGCTATGTTAGGTGCTAATGTTTACAAACCGGGTTTA
AAGAGTGTTGTAATTAATAATGCAAAAGATAAAAGGGTTACAGTTTATAGCGATAATGGAATACCAGTAGCTGAGGGTAA
ATATTATGGCATGAATACTAATTTAGTAGTTGAGGTTACGAATTCCTTATACACCTCCCCTAAATTAGCTGATCTGCCAG
AGTTGAAGAATGGATTAATATATGTTCAAGGTAAGGCATCAATGTATGTTGCTCATTTACTTGATCCACATCCTAATGAG
AAAATAGTAGATATGACTGCATATGCTGGTGGGAAATTAACTCATATTTATCAGTTAGAGCCTAGAGTTAAGCTTATTGG
TTTTGATCATACTGAAAAGAAGGTAGAGAAATTAAGGGATTTAGCAAATAAAATGGGAATGAGAATAGAAATATATAAGG
CGGATTCAAGGTATCTTTACGAGGATTATAAAATAGGTGATGTTGATAAAGTGGTAATTGATCCTCCATGTTCAGCGTTG
GGGATAAGGCCTAAATTATACGACCATAAAACTAAACAAGATATACTCAATTTCCATAAATACCAGAAGCAATTCCTAAA
TTCCGCTTATAAGATTTTAAAGAAAAATGGTGTGGTAATTTATTCTACTTGTACTGTAACTACATGGGAGAACGAGAAGG
TTATAAATGATCCAAGATTTTCGGTAGAATATGAGATTAGATTTCATCCCCATATTCACGAAATTACCGGTTTTTTCATA
GCTAAGCTAATAAAGAAAGGCTAA

Upstream 100 bases:

>100_bases
TATCTGAACCAAATAATGAGGGTGCTAAGGTATTCTGGAGTACGATGAGTTCGTAATTAGTGATTTAAGAGAGGTTTATG
GTGAATATTTAAACGACTTC

Downstream 100 bases:

>100_bases
AAATTCTATATATGCCAATAGAAGAGTATTTAGGTAAAACCCCAAAGGTTTCTCAGAAGGCGTACATACATCCTACTTCT
TACATTATAGGTGATGTGGA

Product: Sun (fmu) protein (sun-1)

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEAIYVEIKGPNEINIHENKVIVDKKTAESAMLGANVYKPGL
KSVVINNAKDKRVTVYSDNGIPVAEGKYYGMNTNLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNE
KIVDMTAYAGGKLTHIYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSAL
GIRPKLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDPRFSVEYEIRFHPHIHEITGFFI
AKLIKKG

Sequences:

>Translated_327_residues
MNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEAIYVEIKGPNEINIHENKVIVDKKTAESAMLGANVYKPGL
KSVVINNAKDKRVTVYSDNGIPVAEGKYYGMNTNLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNE
KIVDMTAYAGGKLTHIYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSAL
GIRPKLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDPRFSVEYEIRFHPHIHEITGFFI
AKLIKKG
>Mature_327_residues
MNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEAIYVEIKGPNEINIHENKVIVDKKTAESAMLGANVYKPGL
KSVVINNAKDKRVTVYSDNGIPVAEGKYYGMNTNLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNE
KIVDMTAYAGGKLTHIYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSAL
GIRPKLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDPRFSVEYEIRFHPHIHEITGFFI
AKLIKKG

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=303, Percent_Identity=26.7326732673267, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI76150625, Length=231, Percent_Identity=29.004329004329, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI76150623, Length=231, Percent_Identity=29.004329004329, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI2367212, Length=219, Percent_Identity=28.310502283105, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17536757, Length=229, Percent_Identity=27.5109170305677, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=233, Percent_Identity=29.1845493562232, Blast_Score=87, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21356513, Length=283, Percent_Identity=26.1484098939929, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24668781, Length=283, Percent_Identity=26.1484098939929, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI22024126, Length=233, Percent_Identity=25.3218884120172, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 37527; Mature: 37527

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEAIYVEIKGPNEINIHENKVI
CCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCEEE
VDKKTAESAMLGANVYKPGLKSVVINNAKDKRVTVYSDNGIPVAEGKYYGMNTNLVVEVT
EECCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEECCEEECCCCCEEEEEE
NSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLE
CHHCCCCCCCCCCHHCCCEEEEECCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEC
PRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSAL
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCEEEECCCCHHH
GIRPKLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDPRF
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCE
SVEYEIRFHPHIHEITGFFIAKLIKKG
EEEEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNAIRKPNPRLYIRVNTLKTSVEKILERLPHFKPDEDFKEAIYVEIKGPNEINIHENKVI
CCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCEEE
VDKKTAESAMLGANVYKPGLKSVVINNAKDKRVTVYSDNGIPVAEGKYYGMNTNLVVEVT
EECCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEECCEEECCCCCEEEEEE
NSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLE
CHHCCCCCCCCCCHHCCCEEEEECCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEC
PRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSAL
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCEEEECCCCHHH
GIRPKLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDPRF
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCE
SVEYEIRFHPHIHEITGFFIAKLIKKG
EEEEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]