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The map label for this gene is rpl12p

Identifier: 15897277

GI number: 15897277

Start: 294560

End: 294880

Strand: Reverse

Name: rpl12p

Synonym: SSO0342

Alternate gene names: 15897277

Gene position: 294880-294560 (Counterclockwise)

Preceding gene: 15897278

Following gene: 15897276

Centisome position: 9.85

GC content: 39.88

Gene sequence:

>321_bases
ATGGAGTACATATATGCGAGTCTCCTATTACATTCAGCTAAGAAGGAAATAAGTGAAGATGCTCTAAAGAATGTACTAAC
TGCAGCTGGTATAAGTGTAGATGAGGTAAGATTAAAAGCCGTAGTAGCTGCATTAAAAGAAGTAAATATTGATGAAGTAC
TAAAGAATGCTGCAGCTATGCCGGTAGCAGTAGCTGCACAACCACAAGCAACTCAAGCACAACCTGCTGCAGAAGAGAAG
AAAGAAGAAAAGAAAGAAGAAGAAAAGAAAGGACCAAGCGAAGAAGAAATTGCAAGCGGGTTAGCCTCACTATTCGGCTA
A

Upstream 100 bases:

>100_bases
AAAGGACCAAGCGAAGAAGAAATTGCAAGCGGACTTGCATCCTTATTTGGATGATAAAAATTTATATAACCTAAGACAAA
AATGTGGAGTGTGAATAAGA

Downstream 100 bases:

>100_bases
AATTCTTACAAAGGATAATAAAAGTAACACTTTTTCCGAGAAATAGTCACATTTTAAATTTGTTTTTATAATACAGAATT
TAATTTATGGATTAGTCCCT

Product: 50S ribosomal protein L12P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAMPVAVAAQPQATQAQPAAEEK
KEEKKEEEKKGPSEEEIASGLASLFG

Sequences:

>Translated_106_residues
MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAMPVAVAAQPQATQAQPAAEEK
KEEKKEEEKKGPSEEEIASGLASLFG
>Mature_106_residues
MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAMPVAVAAQPQATQAQPAAEEK
KEEKKEEEKKGPSEEEIASGLASLFG

Specific function: Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation

COG id: COG2058

COG function: function code J; Ribosomal protein L12E/L44/L45/RPP1/RPP2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L12P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL12_SULSO (P96040)

Other databases:

- EMBL:   U85262
- EMBL:   AE006641
- PIR:   A90177
- RefSeq:   NP_341882.1
- ProteinModelPortal:   P96040
- GeneID:   1455482
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0342
- NMPDR:   fig|273057.1.peg.305
- HOGENOM:   HBG726854
- OMA:   MEYIYGA
- ProtClustDB:   PRK06402
- BioCyc:   SSOL273057:SSO0342-MONOMER
- GO:   GO:0005840
- InterPro:   IPR001813
- InterPro:   IPR022295
- TIGRFAMs:   TIGR03685

Pfam domain/function: PF00428 Ribosomal_60s

EC number: NA

Molecular weight: Translated: 11291; Mature: 11291

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC
PVAVAAQPQATQAQPAAEEKKEEKKEEEKKGPSEEEIASGLASLFG
CHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC
PVAVAAQPQATQAQPAAEEKKEEKKEEEKKGPSEEEIASGLASLFG
CHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252104; 11427726