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The map label for this gene is rps28e [H]

Identifier: 15897178

GI number: 15897178

Start: 199626

End: 199922

Strand: Direct

Name: rps28e [H]

Synonym: SSO5479

Alternate gene names: 15897178

Gene position: 199626-199922 (Clockwise)

Preceding gene: 15897175

Following gene: 15897179

Centisome position: 6.67

GC content: 36.36

Gene sequence:

>297_bases
GTGAAGTATTTAAGTGAATTGTTCATAGTAATAGCTGGTGGAAAAATGAGTGAAAAAACCCAGCAATCACAAGGTTCATC
TATAATAGAAGAATTTGGATTTCCAGCTGAAGTTATCCAAATTTTGGATAGGACTGGTGTAACTGGAGAAGTTACCCAAG
TAAGGGTAAGGGTATTAGAGGGTAGGGATAAAGGGAGAATACTTACTAGAAACGTAAAGGGACCAGTAAGAGTAGGTGAT
ATTCTAATATTAAGAGAGACAGAGAGGGAAGCTAGAAAAATAACAACTAAGAGGTAA

Upstream 100 bases:

>100_bases
CATTCCTTACATACATTAATCCAGTTCCTGGAGGTATTTCATGACCACAGAAACTACATTGCCTAGTAGTAGGCATTTAA
ACCACAAATAAACAATATGG

Downstream 100 bases:

>100_bases
CAAAAACTAATGCCATTATACGTAATCGATAAACCAATAACATTACATATATTAACACAACTTAGGGATAAATATACCGA
TCAAATTAACTTTAGGAAAA

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKYLSELFIVIAGGKMSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGD
ILILRETEREARKITTKR

Sequences:

>Translated_98_residues
MKYLSELFIVIAGGKMSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGD
ILILRETEREARKITTKR
>Mature_98_residues
MKYLSELFIVIAGGKMSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGD
ILILRETEREARKITTKR

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323294, Length=59, Percent_Identity=61.0169491525424, Blast_Score=65, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324741, Length=59, Percent_Identity=61.0169491525424, Blast_Score=64, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24651257, Length=59, Percent_Identity=62.7118644067797, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- ProDom:   PD005541 [H]

Pfam domain/function: PF01200 Ribosomal_S28e [H]

EC number: NA

Molecular weight: Translated: 11029; Mature: 11029

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLSELFIVIAGGKMSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLE
CCHHHEEEEEEECCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCC
GRDKGRILTRNVKGPVRVGDILILRETEREARKITTKR
CCCCCCEEEECCCCCEEECCEEEEECCCHHHHHCCCCC
>Mature Secondary Structure
MKYLSELFIVIAGGKMSEKTQQSQGSSIIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLE
CCHHHEEEEEEECCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCC
GRDKGRILTRNVKGPVRVGDILILRETEREARKITTKR
CCCCCCEEEECCCCCEEECCEEEEECCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]