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The map label for this gene is ycdJ [C]

Identifier: 15897063

GI number: 15897063

Start: 84240

End: 84935

Strand: Direct

Name: ycdJ [C]

Synonym: SSO0102

Alternate gene names: 15897063

Gene position: 84240-84935 (Clockwise)

Preceding gene: 15897062

Following gene: 15897065

Centisome position: 2.82

GC content: 34.05

Gene sequence:

>696_bases
GTGCTAATTCACCATTTAGCTGGTAGTTATAAGAGCTGGAAATTCGTTATTCCAAAGCTCTCATTAGATAACACCGTGGT
TGCGTATGATCTGAGAGGGCATGGTAGATCTTCAACTCCTAATTCACCTTATAATATTGAAGATCATTCCAATGACTTGA
GAAGGTTATTAGTTCAGCTAGGTATAGAAAAACCAGTGTTGATTGGACACTCAATAGGTTCTTTGATTGCAATAGATTAT
GCTTTGAAATATCCAATAGAGAAATTAGTGTTGATTGGAGCTCTATATAGAGCGCCATCATCAGAAGTTTATGAAAAGTA
TGTAAGAATTGCAGTGAATTTTGGAATGAGAGCATTAGCAGAATATAGAAGATTCCACAAAGAGTTTACTGAAACATTAG
CCAGCAACTATCAAGCGTGGAACTCTCTTTTAGAAGTATATGAGGAAACTACGCCAATAGGTTATAAAAACGCAGTGGAA
GGATTATTAAAAGCGAAAGATTATTCAGATGAACTTATGGGAATAAATGCTAAGACCCTTATAGTATATGGGACTTATGA
CGGATTAATAGTAAATCTAAACGTATTTAAGAACAACATGAAAAACGTAGAAATAAAAACTATAGATGGCTACGGTCACT
TTCTTAATTTCGAGAACCCATTATTATTATCGGAGATCATAAAGAATTTCTTATGA

Upstream 100 bases:

>100_bases
TAACAAGAGATAATAATATAGGAGGTGGTGTCAAATTCCATTCATAATAACAGATGATATTCGTCTATACTATGAAATAA
GAGGGCATGGAAAGCCTATT

Downstream 100 bases:

>100_bases
TTCCGTTTAATTTCTTTATAGCATCTAATAATTCGAACTTAACTTTCTCTATTTTCACTTTAATTTCCTCCTCTTGCTTA
CCACTTCCCGCTATTTGAAT

Product: esterase, tropinesterase related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLIHHLAGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQLGIEKPVLIGHSIGSLIAIDY
ALKYPIEKLVLIGALYRAPSSEVYEKYVRIAVNFGMRALAEYRRFHKEFTETLASNYQAWNSLLEVYEETTPIGYKNAVE
GLLKAKDYSDELMGINAKTLIVYGTYDGLIVNLNVFKNNMKNVEIKTIDGYGHFLNFENPLLLSEIIKNFL

Sequences:

>Translated_231_residues
MLIHHLAGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQLGIEKPVLIGHSIGSLIAIDY
ALKYPIEKLVLIGALYRAPSSEVYEKYVRIAVNFGMRALAEYRRFHKEFTETLASNYQAWNSLLEVYEETTPIGYKNAVE
GLLKAKDYSDELMGINAKTLIVYGTYDGLIVNLNVFKNNMKNVEIKTIDGYGHFLNFENPLLLSEIIKNFL
>Mature_231_residues
MLIHHLAGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQLGIEKPVLIGHSIGSLIAIDY
ALKYPIEKLVLIGALYRAPSSEVYEKYVRIAVNFGMRALAEYRRFHKEFTETLASNYQAWNSLLEVYEETTPIGYKNAVE
GLLKAKDYSDELMGINAKTLIVYGTYDGLIVNLNVFKNNMKNVEIKTIDGYGHFLNFENPLLLSEIIKNFL

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17554012, Length=266, Percent_Identity=27.0676691729323, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 26294; Mature: 26294

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHHLAGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQL
CEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GIEKPVLIGHSIGSLIAIDYALKYPIEKLVLIGALYRAPSSEVYEKYVRIAVNFGMRALA
CCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EYRRFHKEFTETLASNYQAWNSLLEVYEETTPIGYKNAVEGLLKAKDYSDELMGINAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCEEE
IVYGTYDGLIVNLNVFKNNMKNVEIKTIDGYGHFLNFENPLLLSEIIKNFL
EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCEECCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLIHHLAGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQL
CEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GIEKPVLIGHSIGSLIAIDYALKYPIEKLVLIGALYRAPSSEVYEKYVRIAVNFGMRALA
CCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EYRRFHKEFTETLASNYQAWNSLLEVYEETTPIGYKNAVEGLLKAKDYSDELMGINAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCEEE
IVYGTYDGLIVNLNVFKNNMKNVEIKTIDGYGHFLNFENPLLLSEIIKNFL
EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]