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The map label for this gene is rps4p [H]

Identifier: 15897040

GI number: 15897040

Start: 58779

End: 59324

Strand: Reverse

Name: rps4p [H]

Synonym: SSO0073

Alternate gene names: 15897040

Gene position: 59324-58779 (Counterclockwise)

Preceding gene: 15897041

Following gene: 15897039

Centisome position: 1.98

GC content: 37.36

Gene sequence:

>546_bases
ATGGGAGATCCGAAGAAAAGTAGGAAAAAGTGGGAAACCCCAGGACATCCTTGGATAAAAGAGAGAATAGGTTATGAGCA
AGAACTATTAGGAAAATATGGTTTAAGGAATAAAAGGGAAATCTGGATAGCGCAGTCAATAATTAGAAAGTTCAGACACC
AAGCAAGATCATTATTAGCATTGCCGCCTGCAGAGAGAGCTGTTAGGGAAAAGCAGCTAGTTGGGAAACTGTTAAAGATG
GGCTTATTAAAGAAAGAAACCGCAACCGTAGATGATATTCTAAGTTTAACTGAGCAAGATCTATTAGAGAGAAGATTACA
GACTATAGTGTATAAGAAAGGATTGTCAAATACGATATATCAAGCTAGGCAGTTAATAACTCATGGACATATTGCGGTTA
ATGGCAAAAGAGTTACATCTCCAGGATATATTGTCAATGTAGATGAGGAAAATCTAATAGATTATTATGTTACTTCTTCA
TTTAAGTCAAGACCACCAGTTATGTCTCAACAAGAAGGAGGTGAGATAGGTGTCAAGCAGGCGTGA

Upstream 100 bases:

>100_bases
AGAACTGGTATGACTATAGGTGTGGCTAGAAAGAAAGCAGCTCAACCACAATCTCAACAATCTTCTTCTCAACAACAAAA
ATCCTCTTAAGGTGATTTAG

Downstream 100 bases:

>100_bases
AATCAGATGGGGAATAGCTCATATTTACGCATCCCAGAATAACACTTTGCTAACAATAAGTGATCTTACTGGCGCGGAGA
TTATCTCCAGAGCTAGTGGA

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKM
GLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSS
FKSRPPVMSQQEGGEIGVKQA

Sequences:

>Translated_181_residues
MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKM
GLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSS
FKSRPPVMSQQEGGEIGVKQA
>Mature_180_residues
GDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKMG
LLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF
KSRPPVMSQQEGGEIGVKQA

Specific function: With S5 and S12 plays an important role in translational accuracy [H]

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI14141193, Length=157, Percent_Identity=40.1273885350318, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17535707, Length=152, Percent_Identity=38.8157894736842, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319666, Length=160, Percent_Identity=38.75, Blast_Score=113, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6325176, Length=160, Percent_Identity=38.125, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24661711, Length=160, Percent_Identity=38.125, Blast_Score=111, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24661707, Length=160, Percent_Identity=38.125, Blast_Score=111, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24661715, Length=130, Percent_Identity=40, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 20748; Mature: 20617

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50889 S4 ; PS00632 RIBOSOMAL_S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA
CCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMSQQEGGEIGVKQ
HHHHHHHCCCEEECCEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure 
GDPKKSRKKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA
CCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
LPPAERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMSQQEGGEIGVKQ
HHHHHHHCCCEEECCEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA