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The map label for this gene is rpl18E

Identifier: 15897037

GI number: 15897037

Start: 57232

End: 57591

Strand: Reverse

Name: rpl18E

Synonym: SSO0070

Alternate gene names: 15897037

Gene position: 57591-57232 (Counterclockwise)

Preceding gene: 15897038

Following gene: 15897036

Centisome position: 1.92

GC content: 34.17

Gene sequence:

>360_bases
ATGAAAGTAACTGGTAGTACAAATATAACTGTTAGAAAGCTTATCAGAAATTTAGAAAAATCCAAAAAACCGTTGTGGAG
AAAAGTAGCTGAAGAGTTATCGATACCTTCCAGAAAAAGGCCCTACATAAATCTTTACAAAATAAATGAACACACTAAAC
CTAATGACATAGTTGTAGTTCCCGGAAAAGTGTTAGGTATAGGCAAGCTGGATCACGAAGTAACTGTTATTGCATTGGAT
TTCTCAAAATCTGCCATAGAGAAAATTAGAGCTTCCGGTGGTCAAGCTATGAGTATATATAAAGCTTTAGAAACCTTTAA
GGATTTTAAAGGAAGAAGTGTGAGGTTGATGAAACAATGA

Upstream 100 bases:

>100_bases
GTGTTGGATCGCTTAAGCCAGAGAGAATTTTATTAGAGGCTGGTAAAAGCATTATAAGAAAGATTGAAGAATTAGAGAAG
AAACTGGTAGAGGTGGTTAA

Downstream 100 bases:

>100_bases
GCACGCAAGTTCAAGAGCAAGTGGTCATAATTAACGCAGAAGGTCAGATCTTAGGTAGGATGGCTAGTAACGTAGTTAGG
CTTTTAAAGGAAGGCAAAAA

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MKVTGSTNITVRKLIRNLEKSKKPLWRKVAEELSIPSRKRPYINLYKINEHTKPNDIVVVPGKVLGIGKLDHEVTVIALD
FSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRLMKQ

Sequences:

>Translated_119_residues
MKVTGSTNITVRKLIRNLEKSKKPLWRKVAEELSIPSRKRPYINLYKINEHTKPNDIVVVPGKVLGIGKLDHEVTVIALD
FSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRLMKQ
>Mature_119_residues
MKVTGSTNITVRKLIRNLEKSKKPLWRKVAEELSIPSRKRPYINLYKINEHTKPNDIVVVPGKVLGIGKLDHEVTVIALD
FSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRLMKQ

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18E_SULSO (P95990)

Other databases:

- EMBL:   Y08257
- EMBL:   AE006641
- PIR:   S75418
- RefSeq:   NP_341642.1
- ProteinModelPortal:   P95990
- SMR:   P95990
- GeneID:   1455323
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0070
- NMPDR:   fig|273057.1.peg.65
- HOGENOM:   HBG392438
- OMA:   SKINRYT
- ProtClustDB:   PRK04005
- BioCyc:   SSOL273057:SSO0070-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00329
- InterPro:   IPR005749
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132
- PANTHER:   PTHR12934

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 13492; Mature: 13492

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS01106 RIBOSOMAL_L18E; PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTGSTNITVRKLIRNLEKSKKPLWRKVAEELSIPSRKRPYINLYKINEHTKPNDIVVV
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEE
PGKVLGIGKLDHEVTVIALDFSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRLMKQ
CCCEEECCCCCCEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MKVTGSTNITVRKLIRNLEKSKKPLWRKVAEELSIPSRKRPYINLYKINEHTKPNDIVVV
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEE
PGKVLGIGKLDHEVTVIALDFSKSAIEKIRASGGQAMSIYKALETFKDFKGRSVRLMKQ
CCCEEECCCCCCEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726