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The map label for this gene is rpoN [H]

Identifier: 15897034

GI number: 15897034

Start: 56169

End: 56369

Strand: Reverse

Name: rpoN [H]

Synonym: SSO5140

Alternate gene names: 15897034

Gene position: 56369-56169 (Counterclockwise)

Preceding gene: 15897035

Following gene: 15897033

Centisome position: 1.88

GC content: 33.33

Gene sequence:

>201_bases
ATGTTAATCCCAATTAGATGTTTTACATGTGGCTCATTGATTGCTGATAAATGGCAGTCATTTATAACGAGAGTTAATGC
TGGAGAGAATCCAGGAAAGGTTCTTGATGATTTAGGAGTAAAAAGATATTGTTGTAGAAGAATGCTTTTATCCCACGTAG
ATATAATTAACGAAGTAATCCACTATACTAGACCAATTTGA

Upstream 100 bases:

>100_bases
TAGGACAATGTTAGCTGGAGATCCAAGGCAGACGGAATCAGAGAAGTGGATGAGATATAGTGCAAGGAGATGGAGGCAGA
AGTCGTATAGGTGAATTGAA

Downstream 100 bases:

>100_bases
AGGTGACCAATTTGAGTGAAAAAGAAGAAAGAGGAGGAGAATTAACTGAAGCAGAAAAAGAGGAATTAAGAAAATCCGAA
AAAGGTGCAATAATAGAATT

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTRPI

Sequences:

>Translated_66_residues
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTRPI
>Mature_66_residues
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTRPI

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI10863925, Length=63, Percent_Identity=50.7936507936508, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17509857, Length=62, Percent_Identity=53.2258064516129, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324784, Length=64, Percent_Identity=46.875, Blast_Score=77, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24649759, Length=63, Percent_Identity=55.5555555555556, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- ProDom:   PD006539 [H]

Pfam domain/function: PF01194 RNA_pol_N [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7591; Mature: 7591

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS01112 RNA_POL_N_8KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
HYTRPI
HHHCCC
>Mature Secondary Structure
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
HYTRPI
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA