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The map label for this gene is lrs14 [H]

Identifier: 15897018

GI number: 15897018

Start: 42978

End: 43367

Strand: Direct

Name: lrs14 [H]

Synonym: SSO0048

Alternate gene names: 15897018

Gene position: 42978-43367 (Clockwise)

Preceding gene: 15897016

Following gene: 15897019

Centisome position: 1.44

GC content: 38.72

Gene sequence:

>390_bases
ATGTCTGAAACCCAATTAAGTGAGGGCACAAGAATAAAGTTACCATCTGGAAAGGATGCTGGTCTAGTAGATATTTTGTC
ATTTTGCTACGGTCTATCAGAAACTGATGTTACAGTACTACTTGCACTAATGAAAGGCGATGCCAGAGGTACTGAAGAAT
TAGAAAGTGATCTTAAGCTTTCTAAGGCTTCGATCAATAGAAGTCTAAATAAGCTACTTGAAATGGGATTAGTAATGAGG
ATAAAGGAGCCAGGTAATAAGGCTGGAAGACCAAGGTATTTGTACAAGGCAAGGGATTACGCTGAGCTTAAAGGTAAGAT
GCTTAGCGATATAAAGGATTGCGCAGATAAGATGGCACAACTAGTTGAAAAGGAATTCAAGCCATTGTAA

Upstream 100 bases:

>100_bases
ATAATACTTGCATTAGAGGTTTATAGATTCAATAGTTACCTTACTATGGTTGGAAAAAATTTTTATATGTGACTTGTTAG
ATTCTTTATTAGTGAGATAA

Downstream 100 bases:

>100_bases
TTTTTTCAAGATTTCTCTATTTTTAGTACTTTAGATTTAAAAGCTTTAATATAATAGTGAATATTAATGTTTTGGCATAG
GAGAAGAGGGTTAAAGTGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSETQLSEGTRIKLPSGKDAGLVDILSFCYGLSETDVTVLLALMKGDARGTEELESDLKLSKASINRSLNKLLEMGLVMR
IKEPGNKAGRPRYLYKARDYAELKGKMLSDIKDCADKMAQLVEKEFKPL

Sequences:

>Translated_129_residues
MSETQLSEGTRIKLPSGKDAGLVDILSFCYGLSETDVTVLLALMKGDARGTEELESDLKLSKASINRSLNKLLEMGLVMR
IKEPGNKAGRPRYLYKARDYAELKGKMLSDIKDCADKMAQLVEKEFKPL
>Mature_128_residues
SETQLSEGTRIKLPSGKDAGLVDILSFCYGLSETDVTVLLALMKGDARGTEELESDLKLSKASINRSLNKLLEMGLVMRI
KEPGNKAGRPRYLYKARDYAELKGKMLSDIKDCADKMAQLVEKEFKPL

Specific function: Acts in transcription regulation. Binds to multiple sequences in its own promoter [H]

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 14329; Mature: 14198

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETQLSEGTRIKLPSGKDAGLVDILSFCYGLSETDVTVLLALMKGDARGTEELESDLKL
CCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
SKASINRSLNKLLEMGLVMRIKEPGNKAGRPRYLYKARDYAELKGKMLSDIKDCADKMAQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVEKEFKPL
HHHHHCCCC
>Mature Secondary Structure 
SETQLSEGTRIKLPSGKDAGLVDILSFCYGLSETDVTVLLALMKGDARGTEELESDLKL
CCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
SKASINRSLNKLLEMGLVMRIKEPGNKAGRPRYLYKARDYAELKGKMLSDIKDCADKMAQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVEKEFKPL
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10049378; 11427726 [H]