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The map label for this gene is ompA [H]

Identifier: 15893178

GI number: 15893178

Start: 1159820

End: 1160227

Strand: Reverse

Name: ompA [H]

Synonym: RC1255

Alternate gene names: 15893178

Gene position: 1160227-1159820 (Counterclockwise)

Preceding gene: 15893179

Following gene: 15893176

Centisome position: 91.45

GC content: 37.75

Gene sequence:

>408_bases
ATGGCAGGAATCAGGCTTACTAAGATTAAAGATTCCGGTTATCAGGAATATGGTATTTCTTTCCAAAACCTAACTATTCA
GAAACGTCAATATAACAAGGTTGAAGGTATACTCGGCGGTGAAATTAAGACAACCTACTATAAGGATGAATTCATAATTA
GACCGCAAATTCATGCCTTTATTAATTACGATTTCAAAGGTAAAACACCGGCAATCGTTGCAGATCTTAACGGTCTTAAT
GAGCCTCTACTGGTACTGGCACCTAAACCTACTAAAATGCTATATGATTTAGGGGCAGGTGCAGTAATTAAGAAGGGTAG
AATGGAGCACGGAGTGCATTACAGTCTGAACTTAGCTAAAAAATACCATGCCCAGTCCGGTACGCTAAGATTTAAAGTAA
ATTTCTAA

Upstream 100 bases:

>100_bases
CGGTTATGAAACAGCACACGGTAAATATAATTCAACTTCTTATAGTGGTCAAGTAGTTGGGGGTTATAATTATCTATGGA
AAGAAACTGCATTTGCACCG

Downstream 100 bases:

>100_bases
AAACCCGCATCAATTAAGAATAAGGATTTTAAAATCCTTATTCTTAATTACACACCGAATAGCGGATTACTATATAATCA
GCTGTTTGCATAAAATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: 190 kDa antigen; Cell surface antigen; rOmp A; rOmpA; 120 kDa outer membrane protein OmpA [H]

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAGIRLTKIKDSGYQEYGISFQNLTIQKRQYNKVEGILGGEIKTTYYKDEFIIRPQIHAFINYDFKGKTPAIVADLNGLN
EPLLVLAPKPTKMLYDLGAGAVIKKGRMEHGVHYSLNLAKKYHAQSGTLRFKVNF

Sequences:

>Translated_135_residues
MAGIRLTKIKDSGYQEYGISFQNLTIQKRQYNKVEGILGGEIKTTYYKDEFIIRPQIHAFINYDFKGKTPAIVADLNGLN
EPLLVLAPKPTKMLYDLGAGAVIKKGRMEHGVHYSLNLAKKYHAQSGTLRFKVNF
>Mature_134_residues
AGIRLTKIKDSGYQEYGISFQNLTIQKRQYNKVEGILGGEIKTTYYKDEFIIRPQIHAFINYDFKGKTPAIVADLNGLNE
PLLVLAPKPTKMLYDLGAGAVIKKGRMEHGVHYSLNLAKKYHAQSGTLRFKVNF

Specific function: Elicits protective immunity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: 32 kDa beta peptide:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C- terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315 [H]

Pfam domain/function: PF03797 Autotransporter [H]

EC number: NA

Molecular weight: Translated: 15280; Mature: 15149

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIRLTKIKDSGYQEYGISFQNLTIQKRQYNKVEGILGGEIKTTYYKDEFIIRPQIHAF
CCCEEEEEEECCCCHHHCCEEEEEEEECCCCCCCCCEECCCEEEEEECCEEEECCEEEEE
INYDFKGKTPAIVADLNGLNEPLLVLAPKPTKMLYDLGAGAVIKKGRMEHGVHYSLNLAK
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCCEEEEEECE
KYHAQSGTLRFKVNF
EECCCCCEEEEEEEC
>Mature Secondary Structure 
AGIRLTKIKDSGYQEYGISFQNLTIQKRQYNKVEGILGGEIKTTYYKDEFIIRPQIHAF
CCEEEEEEECCCCHHHCCEEEEEEEECCCCCCCCCEECCCEEEEEECCEEEECCEEEEE
INYDFKGKTPAIVADLNGLNEPLLVLAPKPTKMLYDLGAGAVIKKGRMEHGVHYSLNLAK
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCCEEEEEECE
KYHAQSGTLRFKVNF
EECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8125327; 11557893; 8862558 [H]