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The map label for this gene is yrbD [C]

Identifier: 15893029

GI number: 15893029

Start: 1028922

End: 1029371

Strand: Reverse

Name: yrbD [C]

Synonym: RC1106

Alternate gene names: 15893029

Gene position: 1029371-1028922 (Counterclockwise)

Preceding gene: 15893030

Following gene: 15893028

Centisome position: 81.13

GC content: 31.56

Gene sequence:

>450_bases
ATGCAACAGAACATTATTGAAACAATTATAGGCTTTGTAGTATTAATTATTGCTTTGCTATTTTTGATTTTTGCCTACAA
AACAGGTAGTTCTATAACTAGCTCAAAAGGATATCAGGTAACTGCTCATTTCCAAAGTGCGGAAGGGATAGCAGTTGGAA
GCGACGTAATGATTTCAGGTATAAAAATCGGTAGTGTAAAGCAAATTACTTTAGATCCAAATAGTTTTGATGCAAGTGTA
TATCTAAATATTAATGATGATGTTAAAATACCTAAAGATTCTAAAGCCCAAGTAGTCACCAGCGGGTTACTTGGAGGTAA
ATATATTTCAATTGTACCGGGTAATGACGATGAAAATTTAGCGGCTAATGAAGAGATAAAATATACTCAATCAGCAATTA
ATATTGAATCATTAATTAATAAAATTGTTTCTTCATTCGGTAGTAAGTAG

Upstream 100 bases:

>100_bases
ATGGCAAAAGAATAATAAAATGGTTAAAAAGCTGCCTAAAACATCAAATCTTAAATATAATAGATGGCAACCGTAATTAA
TTAATAAAATATAAAAAACA

Downstream 100 bases:

>100_bases
AAGTAATACGAAATAAAAAATCATTAAATTTAGCCGAATCTAGTTTAGATTCGTTTTTTTATTGTGTAAGCTATTGTAAA
GTGCTTATAAGAGTAGCATC

Product: ABC transporter substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MQQNIIETIIGFVVLIIALLFLIFAYKTGSSITSSKGYQVTAHFQSAEGIAVGSDVMISGIKIGSVKQITLDPNSFDASV
YLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGNDDENLAANEEIKYTQSAINIESLINKIVSSFGSK

Sequences:

>Translated_149_residues
MQQNIIETIIGFVVLIIALLFLIFAYKTGSSITSSKGYQVTAHFQSAEGIAVGSDVMISGIKIGSVKQITLDPNSFDASV
YLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGNDDENLAANEEIKYTQSAINIESLINKIVSSFGSK
>Mature_149_residues
MQQNIIETIIGFVVLIIALLFLIFAYKTGSSITSSKGYQVTAHFQSAEGIAVGSDVMISGIKIGSVKQITLDPNSFDASV
YLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGNDDENLAANEEIKYTQSAINIESLINKIVSSFGSK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=126, Percent_Identity=34.1269841269841, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 15918; Mature: 15918

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQNIIETIIGFVVLIIALLFLIFAYKTGSSITSSKGYQVTAHFQSAEGIAVGSDVMISG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEC
IKIGSVKQITLDPNSFDASVYLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGNDDENL
EEECCEEEEEECCCCCCEEEEEEECCCEECCCCCCHHEEECCCCCCEEEEEECCCCCCCC
AANEEIKYTQSAINIESLINKIVSSFGSK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQQNIIETIIGFVVLIIALLFLIFAYKTGSSITSSKGYQVTAHFQSAEGIAVGSDVMISG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEC
IKIGSVKQITLDPNSFDASVYLNINDDVKIPKDSKAQVVTSGLLGGKYISIVPGNDDENL
EEECCEEEEEECCCCCCEEEEEEECCCEECCCCCCHHEEECCCCCCEEEEEECCCCCCCC
AANEEIKYTQSAINIESLINKIVSSFGSK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]