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The map label for this gene is himD

Identifier: 15892680

GI number: 15892680

Start: 720651

End: 720893

Strand: Reverse

Name: himD

Synonym: RC0757

Alternate gene names: NA

Gene position: 720893-720651 (Counterclockwise)

Preceding gene: 15892681

Following gene: 15892679

Centisome position: 56.82

GC content: 25.1

Gene sequence:

>243_bases
ATGATTACTAAGAATTATTTAATAGATAAAATACATGATAAGCTGAATTGTCTTTCTAAAGAAGATGTTAAAGATTCAGT
AGATTTAATTTTAGATTATTTAAACGAATCTCTTAAAAAACAAAAGCGTATCGAAATCAGAAATTTCGGTAATTTCTCTA
TCCGCAAACGCAAATTTCCTGAAAGCGAAAAATTCTATAATACGGTTTATTACAGAATGCCTAAAAATTTATTTAAGGAA
TAA

Upstream 100 bases:

>100_bases
CAAAACCAAAATTAATGGACATAATACTTGAAGATTTTGATAGTATAGCACCTAGTTTTTTTAAAAATAGTTTTAACGGA
ATCAAGGCAATTTTTTAATA

Downstream 100 bases:

>100_bases
ATTTCCATGGCTCTTCATACTAAAGATTTAGAACTCTTCACAAAAATATTATCGATAGATGGGAAGCTGATTATTCAAGC
ACTTAATATAGACTCTTTTA

Product: integration host factor beta-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE

Sequences:

>Translated_80_residues
MITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE
>Mature_80_residues
MITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DBHL_RICCN (Q92HL4)

Other databases:

- EMBL:   AE006914
- PIR:   E97794
- RefSeq:   NP_360394.1
- ProteinModelPortal:   Q92HL4
- SMR:   Q92HL4
- GeneID:   927490
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0757
- NMPDR:   fig|272944.1.peg.757
- OMA:   YLIDKVH
- ProtClustDB:   CLSK870972
- BioCyc:   RCON272944:RC0757-MONOMER
- InterPro:   IPR000119
- InterPro:   IPR010992
- Gene3D:   G3DSA:4.10.520.10

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 9796; Mature: 9796

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
ESEKFYNTVYYRMPKNLFKE
CHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
ESEKFYNTVYYRMPKNLFKE
CHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893