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The map label for this gene is rbfA [H]

Identifier: 15892529

GI number: 15892529

Start: 592575

End: 592937

Strand: Reverse

Name: rbfA [H]

Synonym: RC0606

Alternate gene names: 15892529

Gene position: 592937-592575 (Counterclockwise)

Preceding gene: 15892530

Following gene: 15892528

Centisome position: 46.73

GC content: 27.82

Gene sequence:

>363_bases
ATGAAAAAATTAACCAAAACTCATTCTCATAGACAACAAAAATTAGCAAGCATTATAAATGAAGCATTAATAGAAATTCT
AAGGCGTGGCAAAATGCTGGATAGCAGACTTTTTGATTGTCCTCTCACTATTACGAAAGTTATAGTTACTGCTGATCTCA
AAATAGCTAATTGTTATTTCTTGCCTTTTAATACTAAACTAACAATAGATGAAATTATGGATGCATTAAATAATTCTAAA
AATGCTATCAGAAATTTTATTACTAATAAAATAAATATGAAATTCTCGCCTGATATAAGATTTCATTACGATCACGGATT
TGATAATGCTATAAAAGTGGCACACTTATTAAAAGATCTCTGA

Upstream 100 bases:

>100_bases
TCTCCGGTTTTTTTAAAACAAAATTTCTAAAATTTTTAGGTATTGGTTGTTTGGCAAAAGCATGCTATTATGCCTTAGAA
TTGTATATATTTTTTAACGC

Downstream 100 bases:

>100_bases
ATATAAGAATCTAATAATTTATTAAAAAAATTATTATTAATAAATTGTTTTAATATTTAGGTTATTGTATCATGCCATAT
TTTAATCAGTAATGTTATAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYFLPFNTKLTIDEIMDALNNSK
NAIRNFITNKINMKFSPDIRFHYDHGFDNAIKVAHLLKDL

Sequences:

>Translated_120_residues
MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYFLPFNTKLTIDEIMDALNNSK
NAIRNFITNKINMKFSPDIRFHYDHGFDNAIKVAHLLKDL
>Mature_120_residues
MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYFLPFNTKLTIDEIMDALNNSK
NAIRNFITNKINMKFSPDIRFHYDHGFDNAIKVAHLLKDL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13900; Mature: 13900

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEE
LPFNTKLTIDEIMDALNNSKNAIRNFITNKINMKFSPDIRFHYDHGFDNAIKVAHLLKDL
ECCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEE
LPFNTKLTIDEIMDALNNSKNAIRNFITNKINMKFSPDIRFHYDHGFDNAIKVAHLLKDL
ECCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA