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The map label for this gene is rlpA

Identifier: 15892460

GI number: 15892460

Start: 528324

End: 529286

Strand: Reverse

Name: rlpA

Synonym: RC0537

Alternate gene names: 15892460

Gene position: 529286-528324 (Counterclockwise)

Preceding gene: 15892461

Following gene: 15892448

Centisome position: 41.72

GC content: 30.53

Gene sequence:

>963_bases
ATGATAATAGTGAAGAATCATAAATTCAAATTAGACCTCTTGCAGAATGAAGCTAATAAAGAGAAATTTGAAGGAAACAC
GGCATGTAGCACTGCAGCATACACTTTAGTACGTGAGGATGCGAGTACCGGATTGACGTATACCGCAGATATTTCAAAAG
TTGGAAATCAAATAAGTGGTGAGCCTGCACAGCGTATAAAAATACGTGAACACAGGCGAATCCCGAAATTTGACTTACCA
AATCTTAAAGTATCAAAGGTATACAAATTACCTTTAGAAGCAAGTTATGCAAAGGGTTTATTACTTTTGTTAATTTTTTG
TTTTGGTCTAAGCGGTTGTAATACCTCAAAAAGATTACCTTATTCCCACAAATATTCTTACAAAGAATTATCAAAAGATG
ATCCTCATAATCTAACTTATAAAGGACATTATAAAGTCGGTAAAAATTATAAAATAAAAGGAAAGACTTACAAACCTCAC
AACCCTAAATCTTTTACCGAAACAGGTTATGCCTCATGGTACGGTGGACTTAAAGACGGTTTTCACGGTAAAAAAACAGC
TAATGGCGATAGATTTAATAGAAATTTATTAACTGCTGCACATAAAACTCTTCCGCTCCCTTGCTTAGTTAAAGTTACCA
ACAAAGCCAATAATAAAGCAGTAATTTTAATGGTTAATGATAGAGGTCCTTTTAAGAAAAATCGTATAATAGATGTTTCT
CAAAGAGCGGCTGAAATTTTAGCATTTAAAAATCAAGGTATAACTAAAGTAAAAATAGAATATTTACCTAATGAAACTGA
GAAATTTCTAAAAAATATTAATCTAAAAAAACCACAAAGTAAAACTTTAGCTAAAAACTCTAAAAAATCTTCATCTAATA
AAGTTACAAACAACAATAAATGTAGCGTTAATTGTCATATAAAACTTATAAATTTAAAGTATAAATTGGCAGTAACTCCT
TAA

Upstream 100 bases:

>100_bases
GAAGAAGAGCTAGAAAAGCTTGCTTCTATTGCATCAAAAATAAAAGGTGTTGAAAAAGTTGTGTGTTACGCTAAAATAAT
GAATAACTTTAACACCAATA

Downstream 100 bases:

>100_bases
AAGATGTGTGAATATTAAATCGTCAATAGTCGTAGGCGTTGTTGCATGGCTCGATTTTTAACGTCATTGCGAGGAGCCAC
TTAAGTTTCGACGAAGCAAT

Product: rare lipoprotein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIIVKNHKFKLDLLQNEANKEKFEGNTACSTAAYTLVREDASTGLTYTADISKVGNQISGEPAQRIKIREHRRIPKFDLP
NLKVSKVYKLPLEASYAKGLLLLLIFCFGLSGCNTSKRLPYSHKYSYKELSKDDPHNLTYKGHYKVGKNYKIKGKTYKPH
NPKSFTETGYASWYGGLKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKAVILMVNDRGPFKKNRIIDVS
QRAAEILAFKNQGITKVKIEYLPNETEKFLKNINLKKPQSKTLAKNSKKSSSNKVTNNNKCSVNCHIKLINLKYKLAVTP

Sequences:

>Translated_320_residues
MIIVKNHKFKLDLLQNEANKEKFEGNTACSTAAYTLVREDASTGLTYTADISKVGNQISGEPAQRIKIREHRRIPKFDLP
NLKVSKVYKLPLEASYAKGLLLLLIFCFGLSGCNTSKRLPYSHKYSYKELSKDDPHNLTYKGHYKVGKNYKIKGKTYKPH
NPKSFTETGYASWYGGLKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKAVILMVNDRGPFKKNRIIDVS
QRAAEILAFKNQGITKVKIEYLPNETEKFLKNINLKKPQSKTLAKNSKKSSSNKVTNNNKCSVNCHIKLINLKYKLAVTP
>Mature_320_residues
MIIVKNHKFKLDLLQNEANKEKFEGNTACSTAAYTLVREDASTGLTYTADISKVGNQISGEPAQRIKIREHRRIPKFDLP
NLKVSKVYKLPLEASYAKGLLLLLIFCFGLSGCNTSKRLPYSHKYSYKELSKDDPHNLTYKGHYKVGKNYKIKGKTYKPH
NPKSFTETGYASWYGGLKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKAVILMVNDRGPFKKNRIIDVS
QRAAEILAFKNQGITKVKIEYLPNETEKFLKNINLKKPQSKTLAKNSKKSSSNKVTNNNKCSVNCHIKLINLKYKLAVTP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=140, Percent_Identity=37.1428571428571, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_RICCN (Q92I83)

Other databases:

- EMBL:   AE006914
- PIR:   A97767
- RefSeq:   NP_360174.1
- ProteinModelPortal:   Q92I83
- GeneID:   927651
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0537
- NMPDR:   fig|272944.1.peg.537
- OMA:   PLPCLVK
- ProtClustDB:   CLSK870894
- BioCyc:   RCON272944:RC0537-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997
- TIGRFAMs:   TIGR00413
- TIGRFAMs:   TIGR01045
- TIGRFAMs:   TIGR03776

Pfam domain/function: PF03330 DPBB_1; SSF50685 Barwin_like

EC number: NA

Molecular weight: Translated: 36122; Mature: 36122

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVKNHKFKLDLLQNEANKEKFEGNTACSTAAYTLVREDASTGLTYTADISKVGNQISG
CEEECCCCEEEEEECCCCCHHHCCCCCCHHHHHEEEEECCCCCCCEEEEEHHHHCCCCCC
EPAQRIKIREHRRIPKFDLPNLKVSKVYKLPLEASYAKGLLLLLIFCFGLSGCNTSKRLP
CHHHHEEEHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
YSHKYSYKELSKDDPHNLTYKGHYKVGKNYKIKGKTYKPHNPKSFTETGYASWYGGLKDG
CCCCCCHHHCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
FHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKAVILMVNDRGPFKKNRIIDVS
CCCCCCCCCCHHCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEHH
QRAAEILAFKNQGITKVKIEYLPNETEKFLKNINLKKPQSKTLAKNSKKSSSNKVTNNNK
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCE
CSVNCHIKLINLKYKLAVTP
EEEEEEEEEEEEEEEEEECC
>Mature Secondary Structure
MIIVKNHKFKLDLLQNEANKEKFEGNTACSTAAYTLVREDASTGLTYTADISKVGNQISG
CEEECCCCEEEEEECCCCCHHHCCCCCCHHHHHEEEEECCCCCCCEEEEEHHHHCCCCCC
EPAQRIKIREHRRIPKFDLPNLKVSKVYKLPLEASYAKGLLLLLIFCFGLSGCNTSKRLP
CHHHHEEEHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
YSHKYSYKELSKDDPHNLTYKGHYKVGKNYKIKGKTYKPHNPKSFTETGYASWYGGLKDG
CCCCCCHHHCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
FHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKAVILMVNDRGPFKKNRIIDVS
CCCCCCCCCCHHCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEHH
QRAAEILAFKNQGITKVKIEYLPNETEKFLKNINLKKPQSKTLAKNSKKSSSNKVTNNNK
HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCE
CSVNCHIKLINLKYKLAVTP
EEEEEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893