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The map label for this gene is rimM

Identifier: 15892396

GI number: 15892396

Start: 470986

End: 471483

Strand: Reverse

Name: rimM

Synonym: RC0473

Alternate gene names: 15892396

Gene position: 471483-470986 (Counterclockwise)

Preceding gene: 15892403

Following gene: 15892395

Centisome position: 37.16

GC content: 26.51

Gene sequence:

>498_bases
ATGAATTCTTTAGAAAATTTAATTTTAGTCGGTGTAATAAAATCATGTCATGGAATTAAAGGTCATGTAATGTTAAAATC
TTTTACCGACCCTGCTACAAAAATACTTGAAAGAAATTTAGTAAATGAGTCAGGAGCAAATATACATATTAAGCTAATTA
GCCAAAATGCCAAAGGAGAATTAATTTGTACATTTAATGATATAGCTACTCGAAATGAAGCTGAAAATTTAAAAGGTTAT
AAAATATTTTGCTTAAGAGCAAGTTTGCCAGAACTAGAAGAAGATGAATTTTATATAGCAGATTTAACTCATTTACCGGT
ATTAAACCAAGATCATAAAGAAATAGGCAAAATTAAAAATATTCTTAACTTTGGTGCCGGTGACATAATTGAAATAGAAT
TTTCAAATCAAACAACCGAATTATTACCTTTCAATAAAGAATTTTTTCCTATTATAACTAAAGATTATGTGATTTTAAAT
TATCAAAGAGAAGCTTGA

Upstream 100 bases:

>100_bases
AAACAAATTATGACGCCGGCAGCTATTTTTTTTATCATGTCTGTAAAAAAGTTTTTAAATATATTATTATATATAACTAT
CAAAATTTAAAGGCAAATTA

Downstream 100 bases:

>100_bases
ATAATTTACCGTAGTTTTCAATTTCTTTATAGAGTACCCTACGATTCTTATTCACCTCTGTCTCATCCCGTGGCGTGACC
ACGGGATCCAGTTAAAAATA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGELICTFNDIATRNEAENLKGY
KIFCLRASLPELEEDEFYIADLTHLPVLNQDHKEIGKIKNILNFGAGDIIEIEFSNQTTELLPFNKEFFPIITKDYVILN
YQREA

Sequences:

>Translated_165_residues
MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGELICTFNDIATRNEAENLKGY
KIFCLRASLPELEEDEFYIADLTHLPVLNQDHKEIGKIKNILNFGAGDIIEIEFSNQTTELLPFNKEFFPIITKDYVILN
YQREA
>Mature_165_residues
MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGELICTFNDIATRNEAENLKGY
KIFCLRASLPELEEDEFYIADLTHLPVLNQDHKEIGKIKNILNFGAGDIIEIEFSNQTTELLPFNKEFFPIITKDYVILN
YQREA

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RICCN (Q92IE7)

Other databases:

- EMBL:   AE006914
- PIR:   A97759
- RefSeq:   NP_360110.1
- ProteinModelPortal:   Q92IE7
- SMR:   Q92IE7
- GeneID:   927603
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0473
- NMPDR:   fig|272944.1.peg.473
- OMA:   KNILNFG
- ProtClustDB:   PRK00122
- BioCyc:   RCON272944:RC0473-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18705; Mature: 18705

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE
CCCHHHHHHEEEHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
LICTFNDIATRNEAENLKGYKIFCLRASLPELEEDEFYIADLTHLPVLNQDHKEIGKIKN
EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
ILNFGAGDIIEIEFSNQTTELLPFNKEFFPIITKDYVILNYQREA
HHHCCCCCEEEEEECCCCEEEECCCCCCCEEEECCEEEEEEECCC
>Mature Secondary Structure
MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE
CCCHHHHHHEEEHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
LICTFNDIATRNEAENLKGYKIFCLRASLPELEEDEFYIADLTHLPVLNQDHKEIGKIKN
EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
ILNFGAGDIIEIEFSNQTTELLPFNKEFFPIITKDYVILNYQREA
HHHCCCCCEEEEEECCCCEEEECCCCCCCEEEECCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893