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The map label for this gene is degT [H]

Identifier: 158425583

GI number: 158425583

Start: 4524755

End: 4525933

Strand: Reverse

Name: degT [H]

Synonym: AZC_3959

Alternate gene names: 158425583

Gene position: 4525933-4524755 (Counterclockwise)

Preceding gene: 158425584

Following gene: 158425582

Centisome position: 84.29

GC content: 68.19

Gene sequence:

>1179_bases
GTGCCCATGACCTCGACCGCTGCCCAGCTTCATCCGGCGCCGGCTTTCGCCCAGCCCATCCCCTTCATCGACCTCGCCGC
CCAGAAAGCCCGTCTCGGACCGAAGGTGGACCAGGCGGTGCAGGCGGTGCTGGACAGCTGCCGCTTCGTGAACGGGCCGG
AAGTGACGAAGTTCGAGGCCGAGCTCGCCGCCTTCGCCGGCGCCAAATATGCGGTCTCGTGCTCCAGCGGCACGGATGCG
CTGGCCATGCTGCTGATGGCCTGGGGCATCGGCGCGGGCGATGCGGTCTTCTGCCCGGCCTTCACCTTCTGCGCCACCGC
CGAAGTGGTGCCGTGGGTGGGCGCGACCCCGGTGTTCGTGGACGTGAAGGCGGATACCTTCAACATGGACCCGGCGAGCC
TTGAGCAGGCCATTGCGGTCGCCAAGGAAAAGGGCCTCACCCCCAAGGTGGTGATCCCGGTCGATCTGTTCGGCCAGCCG
GCCGACTATGACGCGATCCTGCCGATCGCCGCCCGGCACGGCCTCAAGGTGCTGTGCGACACCGCGCAGGGCTTCGGCGG
CACCTGGAACAACAAGCGCACCGGCTCCATCGGCGATGCCACCGCCACCTCCTTCTTCCCGGCAAAGCCGCTCGGCTGCT
ACGGCGACGGCGGTGCCATCCTCACCGACGATGCCGACCTCGTTGCCGTGCTCAAGAGCGTGCGCGAGCACGGCCAGGGC
GTGGACAAGTATGAGAATGTCCGCATCGGCATGACCGCGCGCCTCGACACCATCCAGGCGGCGGTGCTGCTGGAGAAGCT
CGCCATCTTCGAGGACGAGATCGCCGCCCGCGAAAAGGTCGCCCGCCGCTACAATGAGGCGCTCGCCGACATCGCCACCG
TGCCCTTCGTCGATCCGCGCGCTTCCTCCGTGTGGGCGCAGTACACGCTGCGCTTCGCTCCCGGCGTGCGCGATGCGCTG
GCGAAGGCGCTTCAGGCGGAGGGCATTCCCACCGCCGTCTATTACCGCATCGCTATGCACCGCCAGCCGGCCTATGCGCA
GTATCCGGCCGCTGCCGATAGCCTGCCGGTGGCCGAGGGTCTCTGCGCCGAGGTCATCAGCCTGCCCATGCACGCCTATC
TCGATGAGGCGACGCAGGACAAGATCATCGCCGCCGTGCGTCGCGCCGTCGGCAAGTGA

Upstream 100 bases:

>100_bases
CCGGCTGAGGCCGGGCGCCTTCATACCAGACGCGGGGCCTTCGGCTCCGCTTGTCCATGCCGATCGCCCCGCGCCTCTGC
GCGCGGCCTGCCAGGAACGT

Downstream 100 bases:

>100_bases
TTTCCGCCGCCGAAGGCGGGTAGGACGAGGTTCAGGGGCGCCGCGAGAGATCGCGGCGCCCTTTTCGTTTCTCCCGTGCA
ACGTCGGGCGGGCGTGTTTG

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MPMTSTAAQLHPAPAFAQPIPFIDLAAQKARLGPKVDQAVQAVLDSCRFVNGPEVTKFEAELAAFAGAKYAVSCSSGTDA
LAMLLMAWGIGAGDAVFCPAFTFCATAEVVPWVGATPVFVDVKADTFNMDPASLEQAIAVAKEKGLTPKVVIPVDLFGQP
ADYDAILPIAARHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDADLVAVLKSVREHGQG
VDKYENVRIGMTARLDTIQAAVLLEKLAIFEDEIAAREKVARRYNEALADIATVPFVDPRASSVWAQYTLRFAPGVRDAL
AKALQAEGIPTAVYYRIAMHRQPAYAQYPAAADSLPVAEGLCAEVISLPMHAYLDEATQDKIIAAVRRAVGK

Sequences:

>Translated_392_residues
MPMTSTAAQLHPAPAFAQPIPFIDLAAQKARLGPKVDQAVQAVLDSCRFVNGPEVTKFEAELAAFAGAKYAVSCSSGTDA
LAMLLMAWGIGAGDAVFCPAFTFCATAEVVPWVGATPVFVDVKADTFNMDPASLEQAIAVAKEKGLTPKVVIPVDLFGQP
ADYDAILPIAARHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDADLVAVLKSVREHGQG
VDKYENVRIGMTARLDTIQAAVLLEKLAIFEDEIAAREKVARRYNEALADIATVPFVDPRASSVWAQYTLRFAPGVRDAL
AKALQAEGIPTAVYYRIAMHRQPAYAQYPAAADSLPVAEGLCAEVISLPMHAYLDEATQDKIIAAVRRAVGK
>Mature_391_residues
PMTSTAAQLHPAPAFAQPIPFIDLAAQKARLGPKVDQAVQAVLDSCRFVNGPEVTKFEAELAAFAGAKYAVSCSSGTDAL
AMLLMAWGIGAGDAVFCPAFTFCATAEVVPWVGATPVFVDVKADTFNMDPASLEQAIAVAKEKGLTPKVVIPVDLFGQPA
DYDAILPIAARHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDADLVAVLKSVREHGQGV
DKYENVRIGMTARLDTIQAAVLLEKLAIFEDEIAAREKVARRYNEALADIATVPFVDPRASSVWAQYTLRFAPGVRDALA
KALQAEGIPTAVYYRIAMHRQPAYAQYPAAADSLPVAEGLCAEVISLPMHAYLDEATQDKIIAAVRRAVGK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=374, Percent_Identity=33.6898395721925, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI2367285, Length=338, Percent_Identity=29.585798816568, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41530; Mature: 41399

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTSTAAQLHPAPAFAQPIPFIDLAAQKARLGPKVDQAVQAVLDSCRFVNGPEVTKFEA
CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
ELAAFAGAKYAVSCSSGTDALAMLLMAWGIGAGDAVFCPAFTFCATAEVVPWVGATPVFV
HHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
DVKADTFNMDPASLEQAIAVAKEKGLTPKVVIPVDLFGQPADYDAILPIAARHGLKVLCD
EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCEEEEE
TAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDADLVAVLKSVREHGQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHCCC
VDKYENVRIGMTARLDTIQAAVLLEKLAIFEDEIAAREKVARRYNEALADIATVPFVDPR
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASSVWAQYTLRFAPGVRDALAKALQAEGIPTAVYYRIAMHRQPAYAQYPAAADSLPVAEG
HHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LCAEVISLPMHAYLDEATQDKIIAAVRRAVGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PMTSTAAQLHPAPAFAQPIPFIDLAAQKARLGPKVDQAVQAVLDSCRFVNGPEVTKFEA
CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
ELAAFAGAKYAVSCSSGTDALAMLLMAWGIGAGDAVFCPAFTFCATAEVVPWVGATPVFV
HHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
DVKADTFNMDPASLEQAIAVAKEKGLTPKVVIPVDLFGQPADYDAILPIAARHGLKVLCD
EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCEEEEE
TAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDADLVAVLKSVREHGQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHCCC
VDKYENVRIGMTARLDTIQAAVLLEKLAIFEDEIAAREKVARRYNEALADIATVPFVDPR
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASSVWAQYTLRFAPGVRDALAKALQAEGIPTAVYYRIAMHRQPAYAQYPAAADSLPVAEG
HHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LCAEVISLPMHAYLDEATQDKIIAAVRRAVGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]