| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is trbE [H]
Identifier: 158425485
GI number: 158425485
Start: 4411982
End: 4414420
Strand: Direct
Name: trbE [H]
Synonym: AZC_3861
Alternate gene names: 158425485
Gene position: 4411982-4414420 (Clockwise)
Preceding gene: 158425484
Following gene: 158425486
Centisome position: 82.16
GC content: 66.42
Gene sequence:
>2439_bases ATGATGAACCTCGCCGAGTATCGCCGCGATAACCGGCGCCTTGCCGATTTCCTGCCCTGGGCAGCGCTCGTCGCGCCGGG CATCGTCCTGAACAAGGATGGTTCGTTCCAGCGGACAGCGCGCTTTCGCGGACCGGACCTCGACAGCGCCGTTCCCGCCG AGCTCGTCGCGGTAGCAGGGCGGCTGAACAACGCCTTTCGTCGCCTTGGCTCGGGATGGGCGATCTTCGTGGAGGCGCAG CGCCATGCGGCCGCGACCTACCCGGCGAGCGCCTTTCCCGATGCCGCCTCCGCTCTGGTCGATGCCGAGCGGCGGGCCGA ATTCGAGCAGGCGGGCAGCCATTTCGAGTCGAGCTACGTCCTGACCTTCACCTTCCTGCCGCCGGCCGAGGATGCCGCCC GCACCGAAGGCTGGCTCTATGAAGGGCGGGACCAGGCAGGCCTTGATCCCCATGAGACGTTGCGCGGCTTCGCCGACCGA ACTGATCGGATCCTCAACCTCATCGATGCCTTCATGCCGGAATGCCGCTGGCTGGACGACGACGAGATGCTGACCTATCT GCATGGTTGTGTCTCGACACAGCGGCACCGTGTCCGCGTGCCGGAGACGCCGACCTATCTCGACGCGCTGCTGGCCGATC AGCCGCTCACCGGCGGGCTGGAGCCGCGCCTCGGCGATCAGCACCTACGTGTGCTGACCATCACCGGCTTTCCCACGGTG ACGACGCCCGGCCTGCTCGATGAGCTGAACCGGCTCGCCTTTCCTTATCGCTGGTCGACCCGCGCCATCCTTCTCGACAA GACGGATGCGGTCCGGCTGCTCACCAAGATCCGCCGCCAATGGTTCGCCAAGCGCAAATCCATCGCCGCCATCCTGAAGG AGGTCATGACCAATGAGGCCTCCGTCCTCGTGGACTCGGATGCCGCGAACAAGGCTGAAGATGCCGACCTCGCCCTGCAG GAGCTCGGCGCGGACCATGCCGGCATCGCCTATGTCACCGCGACGGTGACGGTGTGGGATGCCGATCCGCGCATCGCCGA CGAGAAACTGCGACGGGTCGAGAAGGTCATCCAGGGCCGCGACTTCACGGTGATGACCGAGACCATCAATGCCGTCGATG CCTGGCTCGGCAGCTTGCCCGGCCACGTCTATGCCAATGTCCGCCAGCCGCCGATCTCGACGCTCAATCTCGCCCATATG ATTCCGCTGTCAGCGGTGTGGGCCGGCGACAGTGCCGACGCGCATTTCAATGCCCCGCCGCTCCTGTTCGGCAAGACCGA GGGCTCGACCCCGTTCCGGTTCTGCCTCCATGTCGGCGATGTCGGCCACACCCTCGTCGTCGGCCCGACCGGCGCCGGCA AATCCGTGCTGCTGGCGCTGATGGCGCTGCAGTTTCGGCGCTACGCCGGTGCCCAGGTGTTTGCCTTTGATTTCGGCGGC TCGATCCGGGCGGCGGCGCTCGCTTGTGGGGCGGACTGGCACGATCTCGGTGGCGGGCTCAGCGAGGGGAGCGCGGAGAC TGTCGCGCTCCAGCCGCTTGCGCGCATCGATGAAGCTGTGGAACACGCCTGGGCCGCCGACTGGCTGAACGCCATCCTCA CCCGCGAAGGCGTCCATATCACGCCGCAGATGAAGGAACATATCTGGACGGCGCTGACATCGCTCGCCTCGGCGCCGGTC GAGGAACGCACCCTCACCGGCCTCTGCGTCCTGCTTCAGTCCAACGACCTGAAGCAGGCATTGCGTCCCTACTGCCTGGG CGGCGCCTGGGGCCGGCTGCTCGACGCCGAGACCGAGCATCTGGGCTCCGCCACCGTCCAGGTTTTCGAGACTGAGGGGT TGATCGGTACGGAGGCCGCGCCTGCGGTGCTCGCCTATCTGTTCCACCGGATCGAGGATCGGCTCGATGGATCGCCGACC CTTATCATCATCGATGAAGGCTGGCTGGCGCTGGACGACGAGGCCTTCGCGGGCCAACTGCGCGAATGGCTGAAGACGCT GCGCAAGAAGAACGCCAGCGTCATTTTCGCCACGCAGTCGCTCTCCGACATCGACGGCTCGGCGATCGCACCCGCCATCA TCGAGAGCTGCCCGACACGCCTTCTGCTCCCCAATGAGCGGGCCATCGAGCCGCAGATCACCGCCATCTATCGCCGCTTC GGCCTGAACGATCGGCAGATCGAGATCCTCGCGCGGGCGACCCCGAAGCGCGACTACTATTGCCAGTCGCGGCGCGGCAA CCGGCTGTTCGAGCTCGGCCTCAGTGAGGTCGCGCTGGCGCTGTGCGCGGCGTCCTCGAAGACGGACCAGCAGGCCATCG GCAGGATATTCGCCGCGTACGGTCGCGACGGCTTCCTGGACGCTTGGCTGCGTCATCGCGGCCTCGGCTGGGCCGCCGAC CTCCTTCCCAACCTCACCAATTTGGAGACGCAGCCATGA
Upstream 100 bases:
>100_bases GCAGCAGTATGGGCGGCGAAGCGTGATCCGCTTTTCGTCGAGGTGGTGCGCCGGCATCTGCGCATCCCCGCGCACCTCTC GGTCTGAGCGGGGTGCCATG
Downstream 100 bases:
>100_bases CGCTGTTCCGTCCGCGCGCGCTCACCGTCGCCGTCGTGCTGCTGACCGCGCCGCTCGCCCTCGCCCCCGTGCTGTTCCCA TCCGCGCAGGCCCTCACGGT
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MMNLAEYRRDNRRLADFLPWAALVAPGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAGRLNNAFRRLGSGWAIFVEAQ RHAAATYPASAFPDAASALVDAERRAEFEQAGSHFESSYVLTFTFLPPAEDAARTEGWLYEGRDQAGLDPHETLRGFADR TDRILNLIDAFMPECRWLDDDEMLTYLHGCVSTQRHRVRVPETPTYLDALLADQPLTGGLEPRLGDQHLRVLTITGFPTV TTPGLLDELNRLAFPYRWSTRAILLDKTDAVRLLTKIRRQWFAKRKSIAAILKEVMTNEASVLVDSDAANKAEDADLALQ ELGADHAGIAYVTATVTVWDADPRIADEKLRRVEKVIQGRDFTVMTETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGDSADAHFNAPPLLFGKTEGSTPFRFCLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGAQVFAFDFGG SIRAAALACGADWHDLGGGLSEGSAETVALQPLARIDEAVEHAWAADWLNAILTREGVHITPQMKEHIWTALTSLASAPV EERTLTGLCVLLQSNDLKQALRPYCLGGAWGRLLDAETEHLGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPT LIIIDEGWLALDDEAFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQITAIYRRF GLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQAIGRIFAAYGRDGFLDAWLRHRGLGWAAD LLPNLTNLETQP
Sequences:
>Translated_812_residues MMNLAEYRRDNRRLADFLPWAALVAPGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAGRLNNAFRRLGSGWAIFVEAQ RHAAATYPASAFPDAASALVDAERRAEFEQAGSHFESSYVLTFTFLPPAEDAARTEGWLYEGRDQAGLDPHETLRGFADR TDRILNLIDAFMPECRWLDDDEMLTYLHGCVSTQRHRVRVPETPTYLDALLADQPLTGGLEPRLGDQHLRVLTITGFPTV TTPGLLDELNRLAFPYRWSTRAILLDKTDAVRLLTKIRRQWFAKRKSIAAILKEVMTNEASVLVDSDAANKAEDADLALQ ELGADHAGIAYVTATVTVWDADPRIADEKLRRVEKVIQGRDFTVMTETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGDSADAHFNAPPLLFGKTEGSTPFRFCLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGAQVFAFDFGG SIRAAALACGADWHDLGGGLSEGSAETVALQPLARIDEAVEHAWAADWLNAILTREGVHITPQMKEHIWTALTSLASAPV EERTLTGLCVLLQSNDLKQALRPYCLGGAWGRLLDAETEHLGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPT LIIIDEGWLALDDEAFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQITAIYRRF GLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQAIGRIFAAYGRDGFLDAWLRHRGLGWAAD LLPNLTNLETQP >Mature_812_residues MMNLAEYRRDNRRLADFLPWAALVAPGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAGRLNNAFRRLGSGWAIFVEAQ RHAAATYPASAFPDAASALVDAERRAEFEQAGSHFESSYVLTFTFLPPAEDAARTEGWLYEGRDQAGLDPHETLRGFADR TDRILNLIDAFMPECRWLDDDEMLTYLHGCVSTQRHRVRVPETPTYLDALLADQPLTGGLEPRLGDQHLRVLTITGFPTV TTPGLLDELNRLAFPYRWSTRAILLDKTDAVRLLTKIRRQWFAKRKSIAAILKEVMTNEASVLVDSDAANKAEDADLALQ ELGADHAGIAYVTATVTVWDADPRIADEKLRRVEKVIQGRDFTVMTETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGDSADAHFNAPPLLFGKTEGSTPFRFCLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGAQVFAFDFGG SIRAAALACGADWHDLGGGLSEGSAETVALQPLARIDEAVEHAWAADWLNAILTREGVHITPQMKEHIWTALTSLASAPV EERTLTGLCVLLQSNDLKQALRPYCLGGAWGRLLDAETEHLGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPT LIIIDEGWLALDDEAFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQITAIYRRF GLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQAIGRIFAAYGRDGFLDAWLRHRGLGWAAD LLPNLTNLETQP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 89178; Mature: 89178
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNLAEYRRDNRRLADFLPWAALVAPGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAG CCCHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHHHH RLNNAFRRLGSGWAIFVEAQRHAAATYPASAFPDAASALVDAERRAEFEQAGSHFESSYV HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE LTFTFLPPAEDAARTEGWLYEGRDQAGLDPHETLRGFADRTDRILNLIDAFMPECRWLDD EEEEECCCCCHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH DEMLTYLHGCVSTQRHRVRVPETPTYLDALLADQPLTGGLEPRLGDQHLRVLTITGFPTV HHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC TTPGLLDELNRLAFPYRWSTRAILLDKTDAVRLLTKIRRQWFAKRKSIAAILKEVMTNEA CCCHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLVDSDAANKAEDADLALQELGADHAGIAYVTATVTVWDADPRIADEKLRRVEKVIQGR EEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCC DFTVMTETINAVDAWLGSLPGHVYANVRQPPISTLNLAHMIPLSAVWAGDSADAHFNAPP CEEEHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHEEECCCCCCCCCCCCC LLFGKTEGSTPFRFCLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGAQVFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SIRAAALACGADWHDLGGGLSEGSAETVALQPLARIDEAVEHAWAADWLNAILTREGVHI CHHHHHHHCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE TPQMKEHIWTALTSLASAPVEERTLTGLCVLLQSNDLKQALRPYCLGGAWGRLLDAETEH CHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCHHHH LGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPTLIIIDEGWLALDDEAFAGQL CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHHHH REWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQITAIYRRF HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHH GLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQAIGRIFAAY CCCCCEEEEEEECCCCCCCEECCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH GRDGFLDAWLRHRGLGWAADLLPNLTNLETQP CCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure MMNLAEYRRDNRRLADFLPWAALVAPGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAG CCCHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHHHH RLNNAFRRLGSGWAIFVEAQRHAAATYPASAFPDAASALVDAERRAEFEQAGSHFESSYV HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE LTFTFLPPAEDAARTEGWLYEGRDQAGLDPHETLRGFADRTDRILNLIDAFMPECRWLDD EEEEECCCCCHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH DEMLTYLHGCVSTQRHRVRVPETPTYLDALLADQPLTGGLEPRLGDQHLRVLTITGFPTV HHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC TTPGLLDELNRLAFPYRWSTRAILLDKTDAVRLLTKIRRQWFAKRKSIAAILKEVMTNEA CCCHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLVDSDAANKAEDADLALQELGADHAGIAYVTATVTVWDADPRIADEKLRRVEKVIQGR EEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCC DFTVMTETINAVDAWLGSLPGHVYANVRQPPISTLNLAHMIPLSAVWAGDSADAHFNAPP CEEEHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHEEECCCCCCCCCCCCC LLFGKTEGSTPFRFCLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGAQVFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SIRAAALACGADWHDLGGGLSEGSAETVALQPLARIDEAVEHAWAADWLNAILTREGVHI CHHHHHHHCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE TPQMKEHIWTALTSLASAPVEERTLTGLCVLLQSNDLKQALRPYCLGGAWGRLLDAETEH CHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCHHHH LGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPTLIIIDEGWLALDDEAFAGQL CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHHHH REWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQITAIYRRF HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHH GLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQAIGRIFAAY CCCCCEEEEEEECCCCCCCEECCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH GRDGFLDAWLRHRGLGWAADLLPNLTNLETQP CCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]