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The map label for this gene is traF [H]

Identifier: 158425454

GI number: 158425454

Start: 4383327

End: 4383872

Strand: Reverse

Name: traF [H]

Synonym: AZC_3830

Alternate gene names: 158425454

Gene position: 4383872-4383327 (Counterclockwise)

Preceding gene: 158425455

Following gene: 158425453

Centisome position: 81.64

GC content: 66.67

Gene sequence:

>546_bases
ATGAACCGCGCCGCCTATGTGCTGATGGCTGCGGCCACCAGCGTCGGCATGGCCTACGCCGCAACGCTGCCGACGCCACT
CAAGCTGATCTGGAATATCTCGGCGAGCGTCCCTATCGGGCTCTACTCGGTCGAGCCGGCCGATGCCCTCGAGATCACCG
ATTTGGTCGTGGTAATGCCACCACCGCCGCTCGCCGCGTTCCTCATCGGGCGCGGCTATCTCGGTGAGGGCACGCCGCTG
TTGAAGCGCGTGATGGGGCTTCCGGGACAGGAGGTCTGCCGCCTCCATGACGCCATCACCGTCGATGGCGTGCCGCTTGG
CGAAGCGCTGCCGCGCGACCGCATGGGCCGCGATCTGCCGGTCTGGCAGGGCTGCCGGCGTATCGCTCCCGGTCATCTGT
TCCTGATGAACCCGGACGTCGGCGACAGTCTCGACGGACGGTATTTCGGGCCGATTTCAGACGGCACCGTCATCGGCCGT
GCGATGCCACTCCTCACGGATGAAGCCGGCAACAGTGACTTCGTCTGGCGCGCGGCGGTGCGCTGA

Upstream 100 bases:

>100_bases
ATTGGGGGCATGTCGCCCACCGCACCAGCGTCGGCTTCGAGCCACGTGCTTATACAGCAGAGCGCCATCAGGCGTGGCTG
AAGCGGCAGGAGTGCGGTCA

Downstream 100 bases:

>100_bases
CATGCGTCGCTCCGCTTCTTTGCTCGCAGCCGTGCTGTCATTCAGCTGCGTGTTTTCCTCCATCGGCAACGCGCAAAACG
CGCCGCCGGTTATGAAGGCC

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNRAAYVLMAAATSVGMAYAATLPTPLKLIWNISASVPIGLYSVEPADALEITDLVVVMPPPPLAAFLIGRGYLGEGTPL
LKRVMGLPGQEVCRLHDAITVDGVPLGEALPRDRMGRDLPVWQGCRRIAPGHLFLMNPDVGDSLDGRYFGPISDGTVIGR
AMPLLTDEAGNSDFVWRAAVR

Sequences:

>Translated_181_residues
MNRAAYVLMAAATSVGMAYAATLPTPLKLIWNISASVPIGLYSVEPADALEITDLVVVMPPPPLAAFLIGRGYLGEGTPL
LKRVMGLPGQEVCRLHDAITVDGVPLGEALPRDRMGRDLPVWQGCRRIAPGHLFLMNPDVGDSLDGRYFGPISDGTVIGR
AMPLLTDEAGNSDFVWRAAVR
>Mature_181_residues
MNRAAYVLMAAATSVGMAYAATLPTPLKLIWNISASVPIGLYSVEPADALEITDLVVVMPPPPLAAFLIGRGYLGEGTPL
LKRVMGLPGQEVCRLHDAITVDGVPLGEALPRDRMGRDLPVWQGCRRIAPGHLFLMNPDVGDSLDGRYFGPISDGTVIGR
AMPLLTDEAGNSDFVWRAAVR

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 19336; Mature: 19336

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRAAYVLMAAATSVGMAYAATLPTPLKLIWNISASVPIGLYSVEPADALEITDLVVVMP
CCCCEEEEEEHHHHHHHEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEEEEEC
PPPLAAFLIGRGYLGEGTPLLKRVMGLPGQEVCRLHDAITVDGVPLGEALPRDRMGRDLP
CCCHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCEEECCCCCCCCCCHHHCCCCCC
VWQGCRRIAPGHLFLMNPDVGDSLDGRYFGPISDGTVIGRAMPLLTDEAGNSDFVWRAAV
HHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCEEECCEECEEECCCCCCCEEEEEEC
R
C
>Mature Secondary Structure
MNRAAYVLMAAATSVGMAYAATLPTPLKLIWNISASVPIGLYSVEPADALEITDLVVVMP
CCCCEEEEEEHHHHHHHEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEEEEEC
PPPLAAFLIGRGYLGEGTPLLKRVMGLPGQEVCRLHDAITVDGVPLGEALPRDRMGRDLP
CCCHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCEEECCCCCCCCCCHHHCCCCCC
VWQGCRRIAPGHLFLMNPDVGDSLDGRYFGPISDGTVIGRAMPLLTDEAGNSDFVWRAAV
HHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCEEECCEECEEECCCCCCCEEEEEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]