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The map label for this gene is nodJ

Identifier: 158425436

GI number: 158425436

Start: 4365994

End: 4366758

Strand: Reverse

Name: nodJ

Synonym: AZC_3812

Alternate gene names: 158425436

Gene position: 4366758-4365994 (Counterclockwise)

Preceding gene: 158425437

Following gene: 158425435

Centisome position: 81.32

GC content: 50.59

Gene sequence:

>765_bases
ATGAGAGAGAGAATGGTCACCTGGGCGGCTGTATTTCAACGGAACGCTATGTCGTGGCGCCGCGAAATGGCCGCCTCTGT
CCTCGGCAGCGTCATCGATCCACTGATAATGTTATTTGGGCTCGGAGTGGGTCTCGGTAAAATCGTAGACTCGGTGGACG
GGCGCTCATATGCAGAATTTCTAGCGTGCGGTTTAATACTCACAAGCGCCATGTCCGCTTCGAATTACGAAATGCTATAC
GGCACTTACAGTCGTATATATGTTACGGGAACGCTGAAGTCAATGCGCTATGCGCCGATCTGCGTTTCAGACTACCTAAT
AGGTGAAGTCCTCTGGGCTGCGTACGAGGGCGTCGTAGCCGGTACAATTGTGGCTGTGTGCACGGCTTTCTTGGGCTATA
TTCCTGGATGGTCTGTAATTTACATACTGCCGGATATATTATTCGTTGCGTTAATATTTTCTTCGACATCGCTTCTTGTA
GCCGCCATTTCGCGCGGATATGCATTGTTCGCGTTCTACCAGTCGATCGCTATCGCCCCGTTGGTGTTTCTGAGTGGCGT
TATTGTGCCGCGCTTTACAGGTAACGACGTCATATCTGGGATGATTCACTTTTCGCCCCTATACCGCGCGGTGAACGATG
TGCGGAACGTAGTATATGAAGGCCGTGGCACGCAGGTCGGCCCATTATTATTGCTATCTCTACTTTATGCCTCAGTAATG
GTCTTCATTTCGGCAAAGGTGATTTGCGTCCGGCTGGACGATTAG

Upstream 100 bases:

>100_bases
AGGAAGCAGTTCCCACGACCACACGCTTCGCAACATTAGACGACATAATCCGCTTTCCAGGGTTTCCCTGGACTGGCGTT
GGCGGGGTGAACGGCGAAAA

Downstream 100 bases:

>100_bases
GTTTCGCGGCTAACTGGAGGGGTCTGATTATGTATAACTCTGCCTGTCCTGAGGGGCGATCCGTCATCTCAAGGAGGCGG
ACTGGGTTGGGTGACTGCCT

Product: nodulation protein J

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MRERMVTWAAVFQRNAMSWRREMAASVLGSVIDPLIMLFGLGVGLGKIVDSVDGRSYAEFLACGLILTSAMSASNYEMLY
GTYSRIYVTGTLKSMRYAPICVSDYLIGEVLWAAYEGVVAGTIVAVCTAFLGYIPGWSVIYILPDILFVALIFSSTSLLV
AAISRGYALFAFYQSIAIAPLVFLSGVIVPRFTGNDVISGMIHFSPLYRAVNDVRNVVYEGRGTQVGPLLLLSLLYASVM
VFISAKVICVRLDD

Sequences:

>Translated_254_residues
MRERMVTWAAVFQRNAMSWRREMAASVLGSVIDPLIMLFGLGVGLGKIVDSVDGRSYAEFLACGLILTSAMSASNYEMLY
GTYSRIYVTGTLKSMRYAPICVSDYLIGEVLWAAYEGVVAGTIVAVCTAFLGYIPGWSVIYILPDILFVALIFSSTSLLV
AAISRGYALFAFYQSIAIAPLVFLSGVIVPRFTGNDVISGMIHFSPLYRAVNDVRNVVYEGRGTQVGPLLLLSLLYASVM
VFISAKVICVRLDD
>Mature_254_residues
MRERMVTWAAVFQRNAMSWRREMAASVLGSVIDPLIMLFGLGVGLGKIVDSVDGRSYAEFLACGLILTSAMSASNYEMLY
GTYSRIYVTGTLKSMRYAPICVSDYLIGEVLWAAYEGVVAGTIVAVCTAFLGYIPGWSVIYILPDILFVALIFSSTSLLV
AAISRGYALFAFYQSIAIAPLVFLSGVIVPRFTGNDVISGMIHFSPLYRAVNDVRNVVYEGRGTQVGPLLLLSLLYASVM
VFISAKVICVRLDD

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODJ_AZOC5 (Q07757)

Other databases:

- EMBL:   L18897
- EMBL:   AP009384
- PIR:   S35008
- RefSeq:   YP_001526728.1
- GeneID:   5689272
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3812
- HOGENOM:   HBG725215
- OMA:   FEALYSA
- BioCyc:   ACAU438753:AZC_3812-MONOMER
- GO:   GO:0009877
- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981
- PRINTS:   PR00164
- TIGRFAMs:   TIGR01291

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 27702; Mature: 27702

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2377f580)-; HASH(0x23953364)-; HASH(0x23741528)-; HASH(0x239c7f18)-; HASH(0x2341a264)-; HASH(0x22e4dfc0)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERMVTWAAVFQRNAMSWRREMAASVLGSVIDPLIMLFGLGVGLGKIVDSVDGRSYAEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH
LACGLILTSAMSASNYEMLYGTYSRIYVTGTLKSMRYAPICVSDYLIGEVLWAAYEGVVA
HHHHHHHHHHHCCCCCHHEEECCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GTIVAVCTAFLGYIPGWSVIYILPDILFVALIFSSTSLLVAAISRGYALFAFYQSIAIAP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LVFLSGVIVPRFTGNDVISGMIHFSPLYRAVNDVRNVVYEGRGTQVGPLLLLSLLYASVM
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VFISAKVICVRLDD
HHHHHHEEEEEECH
>Mature Secondary Structure
MRERMVTWAAVFQRNAMSWRREMAASVLGSVIDPLIMLFGLGVGLGKIVDSVDGRSYAEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH
LACGLILTSAMSASNYEMLYGTYSRIYVTGTLKSMRYAPICVSDYLIGEVLWAAYEGVVA
HHHHHHHHHHHCCCCCHHEEECCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GTIVAVCTAFLGYIPGWSVIYILPDILFVALIFSSTSLLVAAISRGYALFAFYQSIAIAP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LVFLSGVIVPRFTGNDVISGMIHFSPLYRAVNDVRNVVYEGRGTQVGPLLLLSLLYASVM
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VFISAKVICVRLDD
HHHHHHEEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412659