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The map label for this gene is ygfF [C]

Identifier: 158425432

GI number: 158425432

Start: 4361743

End: 4362471

Strand: Reverse

Name: ygfF [C]

Synonym: AZC_3808

Alternate gene names: 158425432

Gene position: 4362471-4361743 (Counterclockwise)

Preceding gene: 158425433

Following gene: 158425431

Centisome position: 81.24

GC content: 55.83

Gene sequence:

>729_bases
ATGAAAAGGCCTGTTCTAATTCTTGGCGCGCGATCGGCTATAGGGATCGCGATCGCCCGAAGATTCGCGGAACTAGGACA
CCCTATCCAACTCGCGGCTAGATTCGCCCATTCGCTGGGCGCAGAGGCCGAGTATCTGCGTAATAGGTACGGTGTGGCGG
TAAATTGCGTCGAATTCGATGTGTTGGAGTATGGCGACGGAATTTTGTCGCGGCTGCCGACGATGCCCCAGATCGTCATC
TGCGTTGTTGGGCGACTGCACCCGCCCGACCTCGGTGGCAGTAACGCGGCTGCAGTTGCGCTGACGGTGCGCACGAATTT
CGAAGGGCCGGCCTGCGTTCTGTCAGATATAGCCCGGTTATTCGTGGGGGCCGGGGGTGGGATAATTGTTGGTATTAGTT
CGGTAGCTGGAGAAAGGGGGCGCAGCTCAAACTATATATACGGGGCCGCCAAGGCTGGCTTCACGGCGTTCTTGTCGGGG
TTGCGAGCGAGTGTGGCAAGAAGCGGAGTACGGGTGGTAACCGTGCTCCCGGGATATGTGCGGACGCCTATGACTGCGGG
GGCATCGCTCCCGGCATTATTGACAGCGGAACCAATGGAAGTTGCGGACGCGATTCATCGTGCAGTAATCCATAAAAAAG
ATGTTGTGTACGTGAGGCCGATATGGCGGATCATAATGATGATGGTTCGCCTGATACCCGAAAGTATTTTTAAGTGGAGT
AAGTTTTGA

Upstream 100 bases:

>100_bases
GGCAATGTGACTCGCGGGTCGCCCGTTTTGAGCAAGTGCGTGCGAACTGTGGTTGGGATCGAGTGTTCAACTCAGTGCTG
TCTGAGAGGCTAAAGATCTG

Downstream 100 bases:

>100_bases
TGCGCACGTATGGTCTCGAGAGGTGGGGGCTAACGCTCGTATCGACTTTGATCCTAGCCATTGGTATAGGGAGAGTCGCA
TGGGGCGTTATGTTCCAAGA

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKRPVLILGARSAIGIAIARRFAELGHPIQLAARFAHSLGAEAEYLRNRYGVAVNCVEFDVLEYGDGILSRLPTMPQIVI
CVVGRLHPPDLGGSNAAAVALTVRTNFEGPACVLSDIARLFVGAGGGIIVGISSVAGERGRSSNYIYGAAKAGFTAFLSG
LRASVARSGVRVVTVLPGYVRTPMTAGASLPALLTAEPMEVADAIHRAVIHKKDVVYVRPIWRIIMMMVRLIPESIFKWS
KF

Sequences:

>Translated_242_residues
MKRPVLILGARSAIGIAIARRFAELGHPIQLAARFAHSLGAEAEYLRNRYGVAVNCVEFDVLEYGDGILSRLPTMPQIVI
CVVGRLHPPDLGGSNAAAVALTVRTNFEGPACVLSDIARLFVGAGGGIIVGISSVAGERGRSSNYIYGAAKAGFTAFLSG
LRASVARSGVRVVTVLPGYVRTPMTAGASLPALLTAEPMEVADAIHRAVIHKKDVVYVRPIWRIIMMMVRLIPESIFKWS
KF
>Mature_242_residues
MKRPVLILGARSAIGIAIARRFAELGHPIQLAARFAHSLGAEAEYLRNRYGVAVNCVEFDVLEYGDGILSRLPTMPQIVI
CVVGRLHPPDLGGSNAAAVALTVRTNFEGPACVLSDIARLFVGAGGGIIVGISSVAGERGRSSNYIYGAAKAGFTAFLSG
LRASVARSGVRVVTVLPGYVRTPMTAGASLPALLTAEPMEVADAIHRAVIHKKDVVYVRPIWRIIMMMVRLIPESIFKWS
KF

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25867; Mature: 25867

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPVLILGARSAIGIAIARRFAELGHPIQLAARFAHSLGAEAEYLRNRYGVAVNCVEFD
CCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCEEEEEEEEH
VLEYGDGILSRLPTMPQIVICVVGRLHPPDLGGSNAAAVALTVRTNFEGPACVLSDIARL
HHHHCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
FVGAGGGIIVGISSVAGERGRSSNYIYGAAKAGFTAFLSGLRASVARSGVRVVTVLPGYV
HHCCCCCEEEEEHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
RTPMTAGASLPALLTAEPMEVADAIHRAVIHKKDVVYVRPIWRIIMMMVRLIPESIFKWS
HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHC
KF
CC
>Mature Secondary Structure
MKRPVLILGARSAIGIAIARRFAELGHPIQLAARFAHSLGAEAEYLRNRYGVAVNCVEFD
CCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCEEEEEEEEH
VLEYGDGILSRLPTMPQIVICVVGRLHPPDLGGSNAAAVALTVRTNFEGPACVLSDIARL
HHHHCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
FVGAGGGIIVGISSVAGERGRSSNYIYGAAKAGFTAFLSGLRASVARSGVRVVTVLPGYV
HHCCCCCEEEEEHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
RTPMTAGASLPALLTAEPMEVADAIHRAVIHKKDVVYVRPIWRIIMMMVRLIPESIFKWS
HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHC
KF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]