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The map label for this gene is nodD

Identifier: 158425416

GI number: 158425416

Start: 4347417

End: 4348361

Strand: Direct

Name: nodD

Synonym: AZC_3792

Alternate gene names: 158425416

Gene position: 4347417-4348361 (Clockwise)

Preceding gene: 158425415

Following gene: 158425425

Centisome position: 80.96

GC content: 47.2

Gene sequence:

>945_bases
TTGCGATTTAAGGGACTTGATCTGAATCTGCTTGTCGCACTGAATGCTCTGCTTAGCGAGCACAGCGTGACATCTGCAGC
GAAGAGCATCAATCTCAGTCAGCCAGCCATGAGCGCCGCAGTCCAGAGACTGCGGATATATTTCAACGACGATCTATTCA
CGATTAATGGGCGGGAGCGCGTATTTACGGCTCGCGCCGAGTCCCTCGCACCCGCCGTACGAGACATCCTTTCTCGTATA
CAGTCCACCATTATTAAAGGGGATCTGTTCGAGGCCGACAGAAGTGAGCGGGTATTTCGGATAATTTCATCAGATTATTC
GACATCCATATTCATTAGAGGGGTTATTTCCGCCGCCAGCACCTCATTACCCCTACTGAGATTTGAATTGATTTCACCCG
ATGACAATTGCCATGATTTACTCAACAAGTCAGAGGTGGACGCTTTGATTATGCCGGAAATATTTATGTCGTCAGCCCAT
CCATTTGTACCACTGTTTGAGGAGAAAATGGTTTGCGTTGGATGCGCCAGAAATCATGAAGATCGGAACATTTCTAGCAT
TCAGGAGTATTTGTCAATGCGCCACGTTGTTGCGAAGTTTGGTCGTGGGATGCGTCCCTCTCTTGAGGAATGGTTTATGG
CGGAAAACGGAATGAGGAGGCGCATTGATATAGTAGTACAGTCGTTTTCGATGATTCCGCCTGTTATTCAGGGAACGGAG
CGTATTGCGATAATGCCATATCGTCTTGTTGAACATTTTTCAAAATTTATGCCATTAAAAGTCTTTGCGCTACCATTTCC
TCTTCCGAGATTCACAGAATGCCTGCAATGGCCTTCCATTGCAACCCCCGATCTGGGTAATCGCTGGTTGCGAGCATACC
TAGCGGACCATGCATCCCAAATGATGATTTTGGACAGCGCAGAATATTCGGGAGCTTCCATATAG

Upstream 100 bases:

>100_bases
GCCTACAGCGAAGCAAGATGTGACGCTGGACAATCTTTCGTAGCTACGGCAAAATTCACCGTGGGACGACACTGCGGATG
CTGGGTAGATGGAGAGTTAG

Downstream 100 bases:

>100_bases
TCGTTTTCCGATATGCAGAGATCAAGAGCTCTCAATCGCGATTGTGGAGCGCGTTTGACAAATGTTGTTCATCGGAAAAT
TCATAGAACTGCTGCTTAAC

Product: nodulation protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRFKGLDLNLLVALNALLSEHSVTSAAKSINLSQPAMSAAVQRLRIYFNDDLFTINGRERVFTARAESLAPAVRDILSRI
QSTIIKGDLFEADRSERVFRIISSDYSTSIFIRGVISAASTSLPLLRFELISPDDNCHDLLNKSEVDALIMPEIFMSSAH
PFVPLFEEKMVCVGCARNHEDRNISSIQEYLSMRHVVAKFGRGMRPSLEEWFMAENGMRRRIDIVVQSFSMIPPVIQGTE
RIAIMPYRLVEHFSKFMPLKVFALPFPLPRFTECLQWPSIATPDLGNRWLRAYLADHASQMMILDSAEYSGASI

Sequences:

>Translated_314_residues
MRFKGLDLNLLVALNALLSEHSVTSAAKSINLSQPAMSAAVQRLRIYFNDDLFTINGRERVFTARAESLAPAVRDILSRI
QSTIIKGDLFEADRSERVFRIISSDYSTSIFIRGVISAASTSLPLLRFELISPDDNCHDLLNKSEVDALIMPEIFMSSAH
PFVPLFEEKMVCVGCARNHEDRNISSIQEYLSMRHVVAKFGRGMRPSLEEWFMAENGMRRRIDIVVQSFSMIPPVIQGTE
RIAIMPYRLVEHFSKFMPLKVFALPFPLPRFTECLQWPSIATPDLGNRWLRAYLADHASQMMILDSAEYSGASI
>Mature_314_residues
MRFKGLDLNLLVALNALLSEHSVTSAAKSINLSQPAMSAAVQRLRIYFNDDLFTINGRERVFTARAESLAPAVRDILSRI
QSTIIKGDLFEADRSERVFRIISSDYSTSIFIRGVISAASTSLPLLRFELISPDDNCHDLLNKSEVDALIMPEIFMSSAH
PFVPLFEEKMVCVGCARNHEDRNISSIQEYLSMRHVVAKFGRGMRPSLEEWFMAENGMRRRIDIVVQSFSMIPPVIQGTE
RIAIMPYRLVEHFSKFMPLKVFALPFPLPRFTECLQWPSIATPDLGNRWLRAYLADHASQMMILDSAEYSGASI

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081684, Length=296, Percent_Identity=29.3918918918919, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786820, Length=269, Percent_Identity=24.5353159851301, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081766, Length=275, Percent_Identity=26.1818181818182, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NODD_AZOC5 (P20669)

Other databases:

- EMBL:   Z48959
- EMBL:   M60872
- EMBL:   AP009384
- PIR:   A35268
- RefSeq:   YP_001526708.1
- ProteinModelPortal:   P20669
- GeneID:   5691178
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3792
- HOGENOM:   HBG682110
- OMA:   LVFFERV
- ProtClustDB:   CLSK864448
- BioCyc:   ACAU438753:AZC_3792-MONOMER
- GO:   GO:0009877
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 35552; Mature: 35552

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVALNALLSEHSVTSAAKSINLSQPAMSAAVQRLRIYFNDDLFTINGRER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCEEEECCCHH
VFTARAESLAPAVRDILSRIQSTIIKGDLFEADRSERVFRIISSDYSTSIFIRGVISAAS
EEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
TSLPLLRFELISPDDNCHDLLNKSEVDALIMPEIFMSSAHPFVPLFEEKMVCVGCARNHE
CCCCEEEEEEECCCCHHHHHCCCCCCCEEECHHHHHCCCCCCCCHHHCCEEEEECCCCCC
DRNISSIQEYLSMRHVVAKFGRGMRPSLEEWFMAENGMRRRIDIVVQSFSMIPPVIQGTE
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCC
RIAIMPYRLVEHFSKFMPLKVFALPFPLPRFTECLQWPSIATPDLGNRWLRAYLADHASQ
EEEECHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
MMILDSAEYSGASI
EEEEECCCCCCCCC
>Mature Secondary Structure
MRFKGLDLNLLVALNALLSEHSVTSAAKSINLSQPAMSAAVQRLRIYFNDDLFTINGRER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCEEEECCCHH
VFTARAESLAPAVRDILSRIQSTIIKGDLFEADRSERVFRIISSDYSTSIFIRGVISAAS
EEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
TSLPLLRFELISPDDNCHDLLNKSEVDALIMPEIFMSSAHPFVPLFEEKMVCVGCARNHE
CCCCEEEEEEECCCCHHHHHCCCCCCCEEECHHHHHCCCCCCCCHHHCCEEEEECCCCCC
DRNISSIQEYLSMRHVVAKFGRGMRPSLEEWFMAENGMRRRIDIVVQSFSMIPPVIQGTE
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCC
RIAIMPYRLVEHFSKFMPLKVFALPFPLPRFTECLQWPSIATPDLGNRWLRAYLADHASQ
EEEECHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
MMILDSAEYSGASI
EEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2158977