Click here to switch to the map view.

The map label for this gene is lysR [H]

Identifier: 158425321

GI number: 158425321

Start: 4243986

End: 4244921

Strand: Reverse

Name: lysR [H]

Synonym: AZC_3697

Alternate gene names: 158425321

Gene position: 4244921-4243986 (Counterclockwise)

Preceding gene: 158425328

Following gene: 158425319

Centisome position: 79.05

GC content: 70.73

Gene sequence:

>936_bases
TTGATGATGCAGATCCCCAATCTGGATATGGACGCCCTGCGCAGCTTCGTTGCGGGTTTCGAACTGGGCTCCTTCGCGCG
CGCCTCGGACCGTCTGGGACGCTCCACCTCGGCGGTGAGTGCGCAGTTGAAGAAACTGGAGGAGCAGGCGGGCGTCGCTC
TGGTGCGCAAGGCGGGGCGTGGCCTGGCTCTGACCGATGCGGGCGAGACGTTGCTTTCCTATGCGCGGCGCCTCCTCGAT
CTGAATGACGAGGCGCTGACCGCGTTGCGGGGCGTGGAACTGGAAGGCTGGGTCCGGCTCGGCCTTCAGGAGGATTTCGG
CGAGGCCATCCTGCCCCATGTGCTCGGCCGCTTCGCGCGGGCGCACCCGAAGGTGCGCATCGAGAGTCGGATCGCGCGCA
ACAGCGAACTGGTGGACAAGACGCTCTCAGGGCATCTCGACCTCGCGCTGGCCTGGGATGGGGGCGAGCGGGCGGGCCAT
GCCGAACGCCTCGCCGAGGTGCCGCTCTGCTGGCTCGCCGCGCAGGATGGCGTCGCCTCCTGGCGAGCGGGCGGCACCGA
GCCTCTGCCGCTGGCGGCCCTTGAGGCGCCTTGCCTGCTGCGCACCCTCGCCGCGTCGCATCTCGACCGGCAGGGGATGG
CGTGGCGCCTCGCCTTTGTCAGCCCGAGCCTCAGCGGCCTCTGGGCGGCGGCGGCCGCGGGCCTCGGGATTGTCCTGCGG
ACGCAGATCGGCCGTCCGTCGGGCGTGCACGTGCTCGATCCCGCAACGCACGGGTTGCCGCAACTGCCCACGCTCGGCCT
CATGCTCCATCGCCCCGAACGGGAGCCGTCACCGGCGGTCCGGCATCTGGAGGCCATCCTGCGGCAGGCGGTCGGGGAAG
CGGTGGTGCAGGGGGGCGTCTCCGTTCCCGTCCCGGCACGTGCGCTCACACGTTGA

Upstream 100 bases:

>100_bases
GGGAAACTCCGGCTCAGCCGTGGTTGACGCCGGCACTATCGGCTTCCAGAATGATCCCGAAAATCAGATTATTATGGACC
ATATGTCCTGATTTTCAGGA

Downstream 100 bases:

>100_bases
GCAGGATCGCCAGAGCGTAGAGAACCCACATGGCGAGCAAGGCGATGACGCCCACGAGGAAGGCGGGGAAGCGCAGCCGG
ATGTCGTTGGACGTGCAATG

Product: regulatory protein

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MMMQIPNLDMDALRSFVAGFELGSFARASDRLGRSTSAVSAQLKKLEEQAGVALVRKAGRGLALTDAGETLLSYARRLLD
LNDEALTALRGVELEGWVRLGLQEDFGEAILPHVLGRFARAHPKVRIESRIARNSELVDKTLSGHLDLALAWDGGERAGH
AERLAEVPLCWLAAQDGVASWRAGGTEPLPLAALEAPCLLRTLAASHLDRQGMAWRLAFVSPSLSGLWAAAAAGLGIVLR
TQIGRPSGVHVLDPATHGLPQLPTLGLMLHRPEREPSPAVRHLEAILRQAVGEAVVQGGVSVPVPARALTR

Sequences:

>Translated_311_residues
MMMQIPNLDMDALRSFVAGFELGSFARASDRLGRSTSAVSAQLKKLEEQAGVALVRKAGRGLALTDAGETLLSYARRLLD
LNDEALTALRGVELEGWVRLGLQEDFGEAILPHVLGRFARAHPKVRIESRIARNSELVDKTLSGHLDLALAWDGGERAGH
AERLAEVPLCWLAAQDGVASWRAGGTEPLPLAALEAPCLLRTLAASHLDRQGMAWRLAFVSPSLSGLWAAAAAGLGIVLR
TQIGRPSGVHVLDPATHGLPQLPTLGLMLHRPEREPSPAVRHLEAILRQAVGEAVVQGGVSVPVPARALTR
>Mature_311_residues
MMMQIPNLDMDALRSFVAGFELGSFARASDRLGRSTSAVSAQLKKLEEQAGVALVRKAGRGLALTDAGETLLSYARRLLD
LNDEALTALRGVELEGWVRLGLQEDFGEAILPHVLGRFARAHPKVRIESRIARNSELVDKTLSGHLDLALAWDGGERAGH
AERLAEVPLCWLAAQDGVASWRAGGTEPLPLAALEAPCLLRTLAASHLDRQGMAWRLAFVSPSLSGLWAAAAAGLGIVLR
TQIGRPSGVHVLDPATHGLPQLPTLGLMLHRPEREPSPAVRHLEAILRQAVGEAVVQGGVSVPVPARALTR

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=269, Percent_Identity=34.9442379182156, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787806, Length=234, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786713, Length=246, Percent_Identity=28.8617886178862, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790399, Length=314, Percent_Identity=27.7070063694268, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=26.8595041322314, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787879, Length=150, Percent_Identity=32.6666666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=26.7123287671233, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48994962, Length=147, Percent_Identity=30.6122448979592, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=159, Percent_Identity=28.9308176100629, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33225; Mature: 33225

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMQIPNLDMDALRSFVAGFELGSFARASDRLGRSTSAVSAQLKKLEEQAGVALVRKAGR
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GLALTDAGETLLSYARRLLDLNDEALTALRGVELEGWVRLGLQEDFGEAILPHVLGRFAR
CEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHEECCHHHHHHHHHHHHHHHHHH
AHPKVRIESRIARNSELVDKTLSGHLDLALAWDGGERAGHAERLAEVPLCWLAAQDGVAS
CCCCEEHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCEEECCCCCHH
WRAGGTEPLPLAALEAPCLLRTLAASHLDRQGMAWRLAFVSPSLSGLWAAAAAGLGIVLR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEE
TQIGRPSGVHVLDPATHGLPQLPTLGLMLHRPEREPSPAVRHLEAILRQAVGEAVVQGGV
ECCCCCCCCEEECCCCCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVPVPARALTR
CCCCCHHHHCC
>Mature Secondary Structure
MMMQIPNLDMDALRSFVAGFELGSFARASDRLGRSTSAVSAQLKKLEEQAGVALVRKAGR
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GLALTDAGETLLSYARRLLDLNDEALTALRGVELEGWVRLGLQEDFGEAILPHVLGRFAR
CEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHEECCHHHHHHHHHHHHHHHHHH
AHPKVRIESRIARNSELVDKTLSGHLDLALAWDGGERAGHAERLAEVPLCWLAAQDGVAS
CCCCEEHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCEEECCCCCHH
WRAGGTEPLPLAALEAPCLLRTLAASHLDRQGMAWRLAFVSPSLSGLWAAAAAGLGIVLR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEE
TQIGRPSGVHVLDPATHGLPQLPTLGLMLHRPEREPSPAVRHLEAILRQAVGEAVVQGGV
ECCCCCCCCEEECCCCCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVPVPARALTR
CCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]