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The map label for this gene is gntR [H]

Identifier: 158425261

GI number: 158425261

Start: 4175985

End: 4176674

Strand: Direct

Name: gntR [H]

Synonym: AZC_3637

Alternate gene names: 158425261

Gene position: 4175985-4176674 (Clockwise)

Preceding gene: 158425256

Following gene: 158425263

Centisome position: 77.77

GC content: 63.62

Gene sequence:

>690_bases
ATGACTTACCAGGATATCAACGTGAAGCCGATCGAGACCGAATCGAGCTTCCGGATGAAAGCCTATAAGGCACTCAAGGC
TGCCATCATGGAGATGGACATCTACAGCCATGAGGAAGAGATCCGGCTGGAGGAGCGACAGCTCTCCGAGAAGCTCGGCG
TCTCCCGCACCCCGATCCGCGAGGCGATGACGCTTCTGGAGCAGGAAGGCTTCGTGCGCTCGGTGCCGCGTCGGGGCATC
TTCGTGGTGCGCAAGACCAAGCGGGAAGTGCTGGAGATGATCACCGTCTGGGCGGCGCTCGAGAGCATGGCCGCCCGCCT
CGCCTGCCAGCGCGCCACGGACGCCGACATCAAACTGCTGCGCGAGAACATCCGCGCCTTCGCCGACCGCGATCCGGAGG
CCTTCGTCTCGGAATATTCGGAGGCCAATCTCGCCTTCCACCGCCTCATCATCCGGCTTTCGGGCAGCGAACTCCTGGTG
GAGACGACGGACAACCTGTTCCCGCACATGCGCGGCGTGCGCAAGGTGACCATCGGGCAGGACCACCGCGCCCAGCGCTC
CATCATCGACCACACAAAGATCGTTGAGGCCATCGAGAAGCGCGATGCCGACCTCGCCGAACGCCTCGTGCGCGAGCACA
CGCTCGGCCTTGCCAAGCACGTGGAAGCCCACGGCGACTTCCTCGACTGA

Upstream 100 bases:

>100_bases
TGCGAAAAGCCGGAAGCGCCGCGCCGCCCGATCCTTCGGGCCTGCGCACCGGCCCGATCATACGCAACGGCTTGCAACGG
CTGGGTCAGGCAAGGGCGAG

Downstream 100 bases:

>100_bases
GACCAGCCGCCCTAGCGGGCAACCTGCAGAGTGAGGTCCCAAAAGAAAAGCGCCCGGACCGTCTGGCCGGGCGCTTTCTT
ATGTTCGGACCTTCGGATGC

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHEEEIRLEERQLSEKLGVSRTPIREAMTLLEQEGFVRSVPRRGI
FVVRKTKREVLEMITVWAALESMAARLACQRATDADIKLLRENIRAFADRDPEAFVSEYSEANLAFHRLIIRLSGSELLV
ETTDNLFPHMRGVRKVTIGQDHRAQRSIIDHTKIVEAIEKRDADLAERLVREHTLGLAKHVEAHGDFLD

Sequences:

>Translated_229_residues
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHEEEIRLEERQLSEKLGVSRTPIREAMTLLEQEGFVRSVPRRGI
FVVRKTKREVLEMITVWAALESMAARLACQRATDADIKLLRENIRAFADRDPEAFVSEYSEANLAFHRLIIRLSGSELLV
ETTDNLFPHMRGVRKVTIGQDHRAQRSIIDHTKIVEAIEKRDADLAERLVREHTLGLAKHVEAHGDFLD
>Mature_228_residues
TYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHEEEIRLEERQLSEKLGVSRTPIREAMTLLEQEGFVRSVPRRGIF
VVRKTKREVLEMITVWAALESMAARLACQRATDADIKLLRENIRAFADRDPEAFVSEYSEANLAFHRLIIRLSGSELLVE
TTDNLFPHMRGVRKVTIGQDHRAQRSIIDHTKIVEAIEKRDADLAERLVREHTLGLAKHVEAHGDFLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=179, Percent_Identity=25.6983240223464, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789353, Length=199, Percent_Identity=29.1457286432161, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26385; Mature: 26254

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHEEEIRLEERQLSEKLGVSRTPIR
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHH
EAMTLLEQEGFVRSVPRRGIFVVRKTKREVLEMITVWAALESMAARLACQRATDADIKLL
HHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RENIRAFADRDPEAFVSEYSEANLAFHRLIIRLSGSELLVETTDNLFPHMRGVRKVTIGQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCEEEECCC
DHRAQRSIIDHTKIVEAIEKRDADLAERLVREHTLGLAKHVEAHGDFLD
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHEEEIRLEERQLSEKLGVSRTPIR
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHH
EAMTLLEQEGFVRSVPRRGIFVVRKTKREVLEMITVWAALESMAARLACQRATDADIKLL
HHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RENIRAFADRDPEAFVSEYSEANLAFHRLIIRLSGSELLVETTDNLFPHMRGVRKVTIGQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCEEEECCC
DHRAQRSIIDHTKIVEAIEKRDADLAERLVREHTLGLAKHVEAHGDFLD
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]