Click here to switch to the map view.

The map label for this gene is sufD [C]

Identifier: 158425237

GI number: 158425237

Start: 4141783

End: 4143120

Strand: Reverse

Name: sufD [C]

Synonym: AZC_3613

Alternate gene names: 158425237

Gene position: 4143120-4141783 (Counterclockwise)

Preceding gene: 158425238

Following gene: 158425236

Centisome position: 77.16

GC content: 69.96

Gene sequence:

>1338_bases
GTGAGGAACACGGCCATGAACGTCGTCACCCCCTTGCGCACGGCCGCCGAGCAGGCGCTCGCCGCCGCCGTGGAGCAGCG
CCTTCAGAGCCAGCCCGTCGCGGGCCGGATCGGAGAGCTGCGCCGCGCCGCCGCCACCGCCTTCTCCGAGGGTGGTCTTC
CCACCCGCCGGGTGGAGGAATGGAAGTACACCGACCTCAAGGCGATCCTGCGCGATGCCGTGCCGCTGGCCGGCCCGCTC
GATGCCTCCGCCGAGGCCGAAGGCTCCTTCAAGGCGCTCACCGTGCCCGGCGCCAAGCGCATCCTGTTCGTGAACGGCGC
GCTCGCGCGCCCGGCCTCGGACCTGCTGGCGCTGGAAAGCGGCATCGCGGCGCTGCCGCTTGAAAGCGCGATTGCGTCCA
ACGACCCGCTTGCCGAGCGCATCGGGGCGCTCCAGCCGCAGCGCTATGACGCGCCGCTCGCCCTCAACACCGTGTTCCTC
GGCGAGGGCCTGCTGGTGCGCGTGGCGGCGGGGGCGAAGATCGCCGCGCCGCTGCACATCGCCAACGTCTTCACCGGCGA
CGATCCCGTCGCCACTTACGGCCGCGTGGTCGTGGTGGTTGAGGACGGCGCCGAGGTGACGCTGGTGGAGAGCTTCCAGG
GCCGCGACGGTGTTGCCTACCAGACCAACACCGCGCTGGAACTCTTCGTGGGCGACGGCGCCCATGTGGACCTCGTGCGC
GTGCAGGAGGAGGGCGACGCCGCCCTTCACCTCTCCACGGTCATGGTGGAGATCGGCCGCGAGGCGCAGTTGCACACCTT
CGCCCTCAACAGCGGCGCCAAGGCCTCGCGCACCAGCCTCTACGGCCGGTTCGGCGGCCAGCATTCCCATGCCGGCCTGC
GTGGCGCGAACCTGCTGAAGGGCAAGCAGCATCAGGACACGACCCTGCTGCTCGACCATGCGGTGCCCCATTGCGAGAGC
CGCGAGCTCTTCAAGACGGTGCTGGCGGACGAGAGCCATGGCGTCTTCCAGGGCAAGATCGTGGTGCGCCCCGATGCCCA
AAAGACCGATGGCCGCATGATGAGCCGCGCCCTGCTGCTTGGCGAGGCGGCCGAGATGGACAACAAGCCCGAGCTTGAGA
TCTTCGCCGACGATGTGCAGTGCGGCCACGGCGCCACGGCGGGCGATCTCGACGAGGACCTGCTGTTCTATCTCAAGGCC
CGCGGCATTCCGCAGAGGCAGGCGGAGGCCCTGCTGGTGCAGGCCTTCGTGGGCGAGGCCATCGAGTTCGTGGAGAACGA
GGCCCTGCGCGAGCTGATCATCGCCCGCGCCGAGACCTGGCTCGCCAAACGCGCCTGA

Upstream 100 bases:

>100_bases
TGCATGTGATGCACAAGGGCCGCATCGTGCGCTCCGGCGGCAAGGAACTGGCGCTGGAGCTGGAAGCCTCGGGCTATGCG
GCCTATGGCCAGGACGCGGC

Downstream 100 bases:

>100_bases
CGCTGGGGTGCCACGGCGATCCGTGGCACGCCCGCCGGCCGGCGGAGCTGGCCGGATGGATCCGCGCAGAAGGACGCGCG
CTCGTGTCGCGGCCTGCGCA

Product: FeS assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MRNTAMNVVTPLRTAAEQALAAAVEQRLQSQPVAGRIGELRRAAATAFSEGGLPTRRVEEWKYTDLKAILRDAVPLAGPL
DASAEAEGSFKALTVPGAKRILFVNGALARPASDLLALESGIAALPLESAIASNDPLAERIGALQPQRYDAPLALNTVFL
GEGLLVRVAAGAKIAAPLHIANVFTGDDPVATYGRVVVVVEDGAEVTLVESFQGRDGVAYQTNTALELFVGDGAHVDLVR
VQEEGDAALHLSTVMVEIGREAQLHTFALNSGAKASRTSLYGRFGGQHSHAGLRGANLLKGKQHQDTTLLLDHAVPHCES
RELFKTVLADESHGVFQGKIVVRPDAQKTDGRMMSRALLLGEAAEMDNKPELEIFADDVQCGHGATAGDLDEDLLFYLKA
RGIPQRQAEALLVQAFVGEAIEFVENEALRELIIARAETWLAKRA

Sequences:

>Translated_445_residues
MRNTAMNVVTPLRTAAEQALAAAVEQRLQSQPVAGRIGELRRAAATAFSEGGLPTRRVEEWKYTDLKAILRDAVPLAGPL
DASAEAEGSFKALTVPGAKRILFVNGALARPASDLLALESGIAALPLESAIASNDPLAERIGALQPQRYDAPLALNTVFL
GEGLLVRVAAGAKIAAPLHIANVFTGDDPVATYGRVVVVVEDGAEVTLVESFQGRDGVAYQTNTALELFVGDGAHVDLVR
VQEEGDAALHLSTVMVEIGREAQLHTFALNSGAKASRTSLYGRFGGQHSHAGLRGANLLKGKQHQDTTLLLDHAVPHCES
RELFKTVLADESHGVFQGKIVVRPDAQKTDGRMMSRALLLGEAAEMDNKPELEIFADDVQCGHGATAGDLDEDLLFYLKA
RGIPQRQAEALLVQAFVGEAIEFVENEALRELIIARAETWLAKRA
>Mature_445_residues
MRNTAMNVVTPLRTAAEQALAAAVEQRLQSQPVAGRIGELRRAAATAFSEGGLPTRRVEEWKYTDLKAILRDAVPLAGPL
DASAEAEGSFKALTVPGAKRILFVNGALARPASDLLALESGIAALPLESAIASNDPLAERIGALQPQRYDAPLALNTVFL
GEGLLVRVAAGAKIAAPLHIANVFTGDDPVATYGRVVVVVEDGAEVTLVESFQGRDGVAYQTNTALELFVGDGAHVDLVR
VQEEGDAALHLSTVMVEIGREAQLHTFALNSGAKASRTSLYGRFGGQHSHAGLRGANLLKGKQHQDTTLLLDHAVPHCES
RELFKTVLADESHGVFQGKIVVRPDAQKTDGRMMSRALLLGEAAEMDNKPELEIFADDVQCGHGATAGDLDEDLLFYLKA
RGIPQRQAEALLVQAFVGEAIEFVENEALRELIIARAETWLAKRA

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=390, Percent_Identity=30.7692307692308, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081955, Length=353, Percent_Identity=22.3796033994334, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47520; Mature: 47520

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTAMNVVTPLRTAAEQALAAAVEQRLQSQPVAGRIGELRRAAATAFSEGGLPTRRVEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
WKYTDLKAILRDAVPLAGPLDASAEAEGSFKALTVPGAKRILFVNGALARPASDLLALES
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHC
GIAALPLESAIASNDPLAERIGALQPQRYDAPLALNTVFLGEGLLVRVAAGAKIAAPLHI
CCCCCCHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEECCEEE
ANVFTGDDPVATYGRVVVVVEDGAEVTLVESFQGRDGVAYQTNTALELFVGDGAHVDLVR
EEEECCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCEEEEEECCCCEEEEEE
VQEEGDAALHLSTVMVEIGREAQLHTFALNSGAKASRTSLYGRFGGQHSHAGLRGANLLK
EECCCCCEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHC
GKQHQDTTLLLDHAVPHCESRELFKTVLADESHGVFQGKIVVRPDAQKTDGRMMSRALLL
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
GEAAEMDNKPELEIFADDVQCGHGATAGDLDEDLLFYLKARGIPQRQAEALLVQAFVGEA
HHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IEFVENEALRELIIARAETWLAKRA
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRNTAMNVVTPLRTAAEQALAAAVEQRLQSQPVAGRIGELRRAAATAFSEGGLPTRRVEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
WKYTDLKAILRDAVPLAGPLDASAEAEGSFKALTVPGAKRILFVNGALARPASDLLALES
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHC
GIAALPLESAIASNDPLAERIGALQPQRYDAPLALNTVFLGEGLLVRVAAGAKIAAPLHI
CCCCCCHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEECCEEE
ANVFTGDDPVATYGRVVVVVEDGAEVTLVESFQGRDGVAYQTNTALELFVGDGAHVDLVR
EEEECCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCEEEEEECCCCEEEEEE
VQEEGDAALHLSTVMVEIGREAQLHTFALNSGAKASRTSLYGRFGGQHSHAGLRGANLLK
EECCCCCEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHC
GKQHQDTTLLLDHAVPHCESRELFKTVLADESHGVFQGKIVVRPDAQKTDGRMMSRALLL
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
GEAAEMDNKPELEIFADDVQCGHGATAGDLDEDLLFYLKARGIPQRQAEALLVQAFVGEA
HHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IEFVENEALRELIIARAETWLAKRA
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]