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The map label for this gene is 158425231

Identifier: 158425231

GI number: 158425231

Start: 4135426

End: 4137951

Strand: Reverse

Name: 158425231

Synonym: AZC_3607

Alternate gene names: NA

Gene position: 4137951-4135426 (Counterclockwise)

Preceding gene: 158425232

Following gene: 158425230

Centisome position: 77.06

GC content: 63.66

Gene sequence:

>2526_bases
ATGGAGACCCTGAGCACGACTGCGCTTGACCGTCAGATTGCCCTTGAAGAACAGATGTTGATGGTGGGCAGAGAGACCTT
CTACAGGGACATTGAGAAGGCCAAGGAGAGGGGAGAGGAAGCAGGAACCCCCTATGGGATGCGTCTTCTCAAGAACCTTG
TTCTGCCCGTTTCCGATGCCCTTGAAGCCTTCATCGAGAAGGCCCGTTCCGGGGGCGCTGGACGCCGCCACACGGCGCTC
AAGTACGTCGAGATGGTCGAGCCCGAGGTTGCCGCCTATCTGGCGCTCAAGACCGTTCTGGACAGCATCACGCGGCGGGA
GACGCTTCAGCGCTGCGCGATCCGTGTGGCGTCGGCCCTTCAGGATGAAGTGCGGATGCGGGCGTTCCGTGAGCGGCACC
CCGAGCGCTTCAAGGTGACCATGTCCAAGATCGAGCGGGCCACCTCCCGCCGCTACAAGACCACCGTTGCCCGCCTGATG
GCCGGGCGCGTGGGGATCGACGAGGACTGGCCGACCTCCGACAAGCTGCATGTCGGGATCAAGCTGATCGAGGTGCTGCG
GGAGGCGACAGGGATGGTGGACATCCAGCGCGACACCATGGGCATCAACGACACACAGGTCTTTGTGGTCGCCACCGAGG
CAACGCTTCAGTGGATCGCGGACGCCAATCAGCGGATGGAGTTCCTGTCTCCCGCCTTCCTGCCGACGATCATCCCGCCC
AAGCGGTGGACCACGCCCTTTGACGGGGGATACCATTCGGGACTGGTGCAGCGACTGCCCTTCGTGAAGACGCGGAACCG
GAACTATCTGGAAGAACTGGCAGGCCGTGACCTCTCGGCCGTCTATGCCGCTGTCAACGCGATGCAGGAAACCCCGTGGC
AGGTGAACCGGGACGTTCTGCGGGTCCTCAAGGAGGCTTGGGATCGGGACCTGAAGTCTCCCAAGCTCAAGCTGCCCCCT
CGGGACCCCCTCGACCTGCCCCCCAAGCCTGCGGACATCGCCACCAACGAGGTCAGCCGGAAGGAGTGGAAGAAGGCGGC
AAGCCTGATCCACGCGGCCAACGCCAAGCTGAAGTCCAAGCGGGTGCAAATCCGCAAGATCATCGAGCTTGCCGGCCAGT
TCAGCGAGTACGCGGAGATTTACTTCCCGTATCAGCTCGACTTCCGGGGCAGGGTGTACGCGGTGCCCATGTTCCTCAAT
CCGCAGGGTCCCGACCACGCCAAGGCCCTCCTGACCTTCGCGCGGGGCAAACCGATTGGGGACGGTGTCGCGGCCGGGTG
GCTCGCGATCCACGGGGCCAACGTGTACGGCTACGACAAGGCGTCTCTTGAGGATCGCATCTCGTGGGTGGAGGAGCGCA
ACGCCCTGATTGCCTCCGTCGCCGCCGATCCGTGGGGAGAGGGCTTCGAGTTCTGGACCGAGGCGGACAAGCCTTGGCAG
TTTCTGGCCTTCTGCTTCGAGTGGGCGGGCTTCCTGCGGGAGGGCTTCGATTACGTCTCGACGCTGCCCGTTGCCTTGGA
TGGCTCCTGCAACGGCCTGCAACACTACAGCGCGGCCCTGCGGGACCCCGTGGGAGGAGCGGCGGTCAATCTGGTGCCGA
GCGGGAAGCCGCAGGACATTTACGCCCGTGTCGCGGAGGTGGCCTTGGGGCTCGTCACGGCATTCGTGTGTCCGAACGGT
TCCACAACCGGGACTATTCCCAACCTGTCCCGTCTGCGGAAGACATGGGCCGAGCATGGGATTGATGAACTGGACATGGC
GAACCGCTGGCTTGCCTTCGGCATCGACCGGAAGGTGACGAAGAGGGCGGTCATGACGCTCCCCTATGGCTCGACGCAGT
ATTCCTGCCGCGAGTTCATTGAGGAGGCGGTCCGAGAGAAGGTCGAGGAGGGCAAGCCCAATCCCTTCGCGGTGGGAGAC
AGCGACGGCATCTTCAAAGCCACCCTGTGGCTTCAGCCGCTCGTCTGGCAGGCCATCGGTGAGGTGGTTAAGGCTGCCCG
TGTCGGTATGGACTGGCTCAAGGAGTGCGCCCGGCTGGCGGCTGCCGAGGGCCTGCCGGTGATCTGGCAGACACCGGACG
GTTTCCTTGTGCAGCAGTCCTACCGGAACAGCTCGGCCCGCCGGATCGACACCCATCTGGACGGCAGGGTCCGGCTCATC
ATCCGCGAGGAATTGGACACAATCGACAAGCGCCGGCAACAGCAGGGCGTCGCGCCGAATTGGGTCCACTCGATGGACGC
CACCGCCATGCGGATGTTCATCAACCTTGCCCTTACCAACGGGATGCAGCACTTCGCCTTGGTGCATGACAGTTACGGCA
CCGTGGCGGCGGACGTGGAGCTTATGGGGGCCTGCCTGCGCAAGGCGTTCGTGCAGCTCTACACCGATTGTGACCCGCTG
GCCGAGTTCCGGGTGGACATCGCCGGGATGCTCTCGGATGACGCCTTGGGGGATCTTCCCGAGGTCCCAGCCAAGGGCAC
GTTGGATGTCTCTCTGGTGGAGGAGTCCGACTTCTTCTTTGCCTAA

Upstream 100 bases:

>100_bases
CGTGCCCGTCACGGGGTCCGACCCCCTGTGACCGGGCGACCGGGAATTTCCCCCCACTTTCACCCTGAGCCCTAGCGGCC
CTTACCTGAGGAGACTCCCC

Downstream 100 bases:

>100_bases
TTGGTTCCAGAAACGGGACGGTTCCGAATGTGGGCTGGTGCAGTCACTGCACCGGCCCCGGCCAATTAACCCCCACTTTC
ACTCTGAGAAACGGAGGATC

Product: DNA-directed RNA polymerase

Products: NA

Alternate protein names: Phage-Related DNA-Directed RNA Polymerase; DNA-Dependent RNA Polymerase Domain Protein; RNA-Polymerase; DNA-Dependent RNA Polymerase

Number of amino acids: Translated: 841; Mature: 841

Protein sequence:

>841_residues
METLSTTALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLPVSDALEAFIEKARSGGAGRRHTAL
KYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASALQDEVRMRAFRERHPERFKVTMSKIERATSRRYKTTVARLM
AGRVGIDEDWPTSDKLHVGIKLIEVLREATGMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPTIIPP
KRWTTPFDGGYHSGLVQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVLRVLKEAWDRDLKSPKLKLPP
RDPLDLPPKPADIATNEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLN
PQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVYGYDKASLEDRISWVEERNALIASVAADPWGEGFEFWTEADKPWQ
FLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALGLVTAFVCPNG
STTGTIPNLSRLRKTWAEHGIDELDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGD
SDGIFKATLWLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRIDTHLDGRVRLI
IREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHDSYGTVAADVELMGACLRKAFVQLYTDCDPL
AEFRVDIAGMLSDDALGDLPEVPAKGTLDVSLVEESDFFFA

Sequences:

>Translated_841_residues
METLSTTALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLPVSDALEAFIEKARSGGAGRRHTAL
KYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASALQDEVRMRAFRERHPERFKVTMSKIERATSRRYKTTVARLM
AGRVGIDEDWPTSDKLHVGIKLIEVLREATGMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPTIIPP
KRWTTPFDGGYHSGLVQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVLRVLKEAWDRDLKSPKLKLPP
RDPLDLPPKPADIATNEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLN
PQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVYGYDKASLEDRISWVEERNALIASVAADPWGEGFEFWTEADKPWQ
FLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALGLVTAFVCPNG
STTGTIPNLSRLRKTWAEHGIDELDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGD
SDGIFKATLWLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRIDTHLDGRVRLI
IREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHDSYGTVAADVELMGACLRKAFVQLYTDCDPL
AEFRVDIAGMLSDDALGDLPEVPAKGTLDVSLVEESDFFFA
>Mature_841_residues
METLSTTALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLPVSDALEAFIEKARSGGAGRRHTAL
KYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASALQDEVRMRAFRERHPERFKVTMSKIERATSRRYKTTVARLM
AGRVGIDEDWPTSDKLHVGIKLIEVLREATGMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPTIIPP
KRWTTPFDGGYHSGLVQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVLRVLKEAWDRDLKSPKLKLPP
RDPLDLPPKPADIATNEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLN
PQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVYGYDKASLEDRISWVEERNALIASVAADPWGEGFEFWTEADKPWQ
FLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALGLVTAFVCPNG
STTGTIPNLSRLRKTWAEHGIDELDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGD
SDGIFKATLWLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRIDTHLDGRVRLI
IREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHDSYGTVAADVELMGACLRKAFVQLYTDCDPL
AEFRVDIAGMLSDDALGDLPEVPAKGTLDVSLVEESDFFFA

Specific function: Unknown

COG id: COG5108

COG function: function code K; Mitochondrial DNA-directed RNA polymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110618253, Length=706, Percent_Identity=30.5949008498584, Blast_Score=249, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI193203364, Length=661, Percent_Identity=28.5930408472012, Blast_Score=200, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI193203366, Length=671, Percent_Identity=28.3159463487332, Blast_Score=199, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6321072, Length=863, Percent_Identity=28.0417149478563, Blast_Score=275, Evalue=2e-74,
Organism=Drosophila melanogaster, GI20129143, Length=653, Percent_Identity=28.7901990811639, Blast_Score=222, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94276; Mature: 94276

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00900 RNA_POL_PHAGE_1 ; PS00489 RNA_POL_PHAGE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLSTTALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLPVSDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCHHHH
LEAFIEKARSGGAGRRHTALKYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASAL
HHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDEVRMRAFRERHPERFKVTMSKIERATSRRYKTTVARLMAGRVGIDEDWPTSDKLHVGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
KLIEVLREATGMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPTIIPP
HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCHHHHCCCCCC
KRWTTPFDGGYHSGLVQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVL
CCCCCCCCCCHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
RVLKEAWDRDLKSPKLKLPPRDPLDLPPKPADIATNEVSRKEWKKAASLIHAANAKLKSK
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
RVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLNPQGPDHAKALLTFARGKPIG
HHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCC
DGVAAGWLAIHGANVYGYDKASLEDRISWVEERNALIASVAADPWGEGFEFWTEADKPWQ
CCHHHHHHEEECCCEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHCCCCCHHH
FLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDI
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
YARVAEVALGLVTAFVCPNGSTTGTIPNLSRLRKTWAEHGIDELDMANRWLAFGIDRKVT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCHHHHCCCCHHHH
KRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGDSDGIFKATLWLQPLVWQAIG
HHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEHHHHHHHHHHHHHH
EVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRIDTHLDGRVRLI
HHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHCCCCHHHHHHCCCCEEEEE
IREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHDSYGTVAADVE
EHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHH
LMGACLRKAFVQLYTDCDPLAEFRVDIAGMLSDDALGDLPEVPAKGTLDVSLVEESDFFF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCC
A
C
>Mature Secondary Structure
METLSTTALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLPVSDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCHHHH
LEAFIEKARSGGAGRRHTALKYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASAL
HHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDEVRMRAFRERHPERFKVTMSKIERATSRRYKTTVARLMAGRVGIDEDWPTSDKLHVGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
KLIEVLREATGMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPTIIPP
HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCHHHHCCCCCC
KRWTTPFDGGYHSGLVQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVL
CCCCCCCCCCHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
RVLKEAWDRDLKSPKLKLPPRDPLDLPPKPADIATNEVSRKEWKKAASLIHAANAKLKSK
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
RVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLNPQGPDHAKALLTFARGKPIG
HHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCC
DGVAAGWLAIHGANVYGYDKASLEDRISWVEERNALIASVAADPWGEGFEFWTEADKPWQ
CCHHHHHHEEECCCEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHCCCCCHHH
FLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDI
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
YARVAEVALGLVTAFVCPNGSTTGTIPNLSRLRKTWAEHGIDELDMANRWLAFGIDRKVT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCHHHHCCCCHHHH
KRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGDSDGIFKATLWLQPLVWQAIG
HHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEHHHHHHHHHHHHHH
EVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRIDTHLDGRVRLI
HHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHCCCCHHHHHHCCCCEEEEE
IREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHDSYGTVAADVE
EHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHH
LMGACLRKAFVQLYTDCDPLAEFRVDIAGMLSDDALGDLPEVPAKGTLDVSLVEESDFFF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA