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The map label for this gene is cph2 [H]

Identifier: 158425190

GI number: 158425190

Start: 4092572

End: 4093885

Strand: Reverse

Name: cph2 [H]

Synonym: AZC_3566

Alternate gene names: 158425190

Gene position: 4093885-4092572 (Counterclockwise)

Preceding gene: 158425192

Following gene: 158425187

Centisome position: 76.24

GC content: 66.36

Gene sequence:

>1314_bases
GTGAGCTCAGCCGTGAACAAACAGGACCTGTACAGCGTCATCGCCGAGCTCCTTGACAGCATCGACGTCGCCATCTGCGT
ATTCGATCGAGAGGATCATACCCTTTTGTGGAACGCGACGTTTCTGCATTTTTTTCCAGAGCATGCGGGGCGCGTTCACC
CTGGGGAATCCTATCGCGCGAATCTTGAACGCTTCTACCTGGGACGTCTGCCGCAGGAAGAGCGTGACAGCATCGAGCGC
TATATTGACGAGGGCGTGGATCGCCATCGCCAGCAGACTCGCCCCTTCACCTTCACGCACCGGGGGCGATACCTGCGGGT
GGGCTCCCTGCCGCTCCCGGACGGCGACCGCATCCGCGTCTGGCAGGAAATGGGGCGCGACATCGGGCAGGTGGAGAACC
CCCCCGGCTGGACGGAATTTCCCATCGATCTGCTCGAATATCTGGCAGATGGCGCGATGGTGCTCGACAAGCATGACCGC
ATCATCGCCACCAACCGCGAGTTCCGCATCCTCTATGACGTGGACCCTGAGCGCTCGGTGATCGGCTGCACGCTCCATGA
CCTGGTGCAGGAGAGCTGGGTGCGGGCCGGCGCACCGGAGCGGGCGCGCCAGTTCAACATGCTGGAGCGGATGCGCTTCG
CCGGTGTACCGTTCGAGGTGGAACTGCCCGGCGGCCGCTGGCGCCGGGTGATCGCCCATCGCACGGCCCGCGGCATCGGC
TACTTCACCCATTCCGACATCACGCCGCTGAAGCAGGCGGTGAGCGACCTCTCCGCCATCGCCGCCACCGACAGCCTCAC
GGGTCTCGCCAACCGCCGCCACTTCGACCAGGTCTTCGACGAGGAATGGCGCCGCCGCCAGCGCGACGGCACGCTCATCG
GCCTGCTTCTGATCGACGTGGACCATTTCAAGCAAGTCAATGATCAGTACGGTCACATGGTGGGGGATGCCTGCCTGCGG
CGGGTGGCGCATGTGATCCGTGGGGCGCTCCTGCGCTCCGGCGACGTGGCGGCGCGCCATGGCGGCGAGGAATTCGCGGT
CCTGCTGCCCGATACCGGCCTTTCCGGCGCGCAGGCGGTGGCGCGGCGCATCCGGGCAGCGCTGGCGCAGGAGGACTGGC
AGGCTACCCATCCTGACCTTCGCGCCATCACCACCAGCATCGGCATCTGCGCCGGCCCGCCGGCCAGCGGTGCGACCGTC
AGCGATTTCGTGCGCTGCGCCGACGCCGCCCTCTATCGCGCCAAGAATGACGGGCGCGACCGCGTGATGGAGAGCCTGCT
GACGCCGCTGGAAGGCGGCAGCGTCTCGCTCTAG

Upstream 100 bases:

>100_bases
ATGCCCGATGGAACGTGTGTTGTCGTGAAACTGTCATGACGGCATCACCATACAGTTGTAAGATATTCATCTTGTCCGTC
CTCCGGCCGTCCTGGCCAGC

Downstream 100 bases:

>100_bases
GACCGCAGTTCAGGCGAGGCGCAGGGGCGGACGGCCGTCCACGAGAAAGTCGTCGCTCTCGTCCTTCAGGTCCACGCCCG
TCAGGCTGCGCCGGAACGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSSAVNKQDLYSVIAELLDSIDVAICVFDREDHTLLWNATFLHFFPEHAGRVHPGESYRANLERFYLGRLPQEERDSIER
YIDEGVDRHRQQTRPFTFTHRGRYLRVGSLPLPDGDRIRVWQEMGRDIGQVENPPGWTEFPIDLLEYLADGAMVLDKHDR
IIATNREFRILYDVDPERSVIGCTLHDLVQESWVRAGAPERARQFNMLERMRFAGVPFEVELPGGRWRRVIAHRTARGIG
YFTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLIDVDHFKQVNDQYGHMVGDACLR
RVAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQAVARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATV
SDFVRCADAALYRAKNDGRDRVMESLLTPLEGGSVSL

Sequences:

>Translated_437_residues
MSSAVNKQDLYSVIAELLDSIDVAICVFDREDHTLLWNATFLHFFPEHAGRVHPGESYRANLERFYLGRLPQEERDSIER
YIDEGVDRHRQQTRPFTFTHRGRYLRVGSLPLPDGDRIRVWQEMGRDIGQVENPPGWTEFPIDLLEYLADGAMVLDKHDR
IIATNREFRILYDVDPERSVIGCTLHDLVQESWVRAGAPERARQFNMLERMRFAGVPFEVELPGGRWRRVIAHRTARGIG
YFTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLIDVDHFKQVNDQYGHMVGDACLR
RVAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQAVARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATV
SDFVRCADAALYRAKNDGRDRVMESLLTPLEGGSVSL
>Mature_436_residues
SSAVNKQDLYSVIAELLDSIDVAICVFDREDHTLLWNATFLHFFPEHAGRVHPGESYRANLERFYLGRLPQEERDSIERY
IDEGVDRHRQQTRPFTFTHRGRYLRVGSLPLPDGDRIRVWQEMGRDIGQVENPPGWTEFPIDLLEYLADGAMVLDKHDRI
IATNREFRILYDVDPERSVIGCTLHDLVQESWVRAGAPERARQFNMLERMRFAGVPFEVELPGGRWRRVIAHRTARGIGY
FTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLIDVDHFKQVNDQYGHMVGDACLRR
VAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQAVARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATVS
DFVRCADAALYRAKNDGRDRVMESLLTPLEGGSVSL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=239, Percent_Identity=33.8912133891213, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=35.195530726257, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=32.7956989247312, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=223, Percent_Identity=34.0807174887892, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.125748502994, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=36.1111111111111, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.0877192982456, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=32.1428571428571, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=32.9192546583851, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30.5882352941176, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=189, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 49267; Mature: 49136

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAVNKQDLYSVIAELLDSIDVAICVFDREDHTLLWNATFLHFFPEHAGRVHPGESYRA
CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCHHHHH
NLERFYLGRLPQEERDSIERYIDEGVDRHRQQTRPFTFTHRGRYLRVGSLPLPDGDRIRV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCCHHHH
WQEMGRDIGQVENPPGWTEFPIDLLEYLADGAMVLDKHDRIIATNREFRILYDVDPERSV
HHHHCHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEEEECCCEEEEEECCCCCCE
IGCTLHDLVQESWVRAGAPERARQFNMLERMRFAGVPFEVELPGGRWRRVIAHRTARGIG
EHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC
YFTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLIDV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHH
DHFKQVNDQYGHMVGDACLRRVAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCHHHHH
ARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATVSDFVRCADAALYRAKNDGRD
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
RVMESLLTPLEGGSVSL
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSAVNKQDLYSVIAELLDSIDVAICVFDREDHTLLWNATFLHFFPEHAGRVHPGESYRA
CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCHHHHH
NLERFYLGRLPQEERDSIERYIDEGVDRHRQQTRPFTFTHRGRYLRVGSLPLPDGDRIRV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCCHHHH
WQEMGRDIGQVENPPGWTEFPIDLLEYLADGAMVLDKHDRIIATNREFRILYDVDPERSV
HHHHCHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEEEECCCEEEEEECCCCCCE
IGCTLHDLVQESWVRAGAPERARQFNMLERMRFAGVPFEVELPGGRWRRVIAHRTARGIG
EHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC
YFTHSDITPLKQAVSDLSAIAATDSLTGLANRRHFDQVFDEEWRRRQRDGTLIGLLLIDV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHH
DHFKQVNDQYGHMVGDACLRRVAHVIRGALLRSGDVAARHGGEEFAVLLPDTGLSGAQAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCHHHHH
ARRIRAALAQEDWQATHPDLRAITTSIGICAGPPASGATVSDFVRCADAALYRAKNDGRD
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
RVMESLLTPLEGGSVSL
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]