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The map label for this gene is ydcN [H]

Identifier: 158425156

GI number: 158425156

Start: 4056848

End: 4057426

Strand: Direct

Name: ydcN [H]

Synonym: AZC_3532

Alternate gene names: 158425156

Gene position: 4056848-4057426 (Clockwise)

Preceding gene: 158425155

Following gene: 158425157

Centisome position: 75.55

GC content: 69.95

Gene sequence:

>579_bases
ATGGACGACATCACGGGACGGCTGGCGCGCCGGCTCCGTCAGGAGAGGGAGGCGCGGAGCTGGTCACTGGCGGATCTGGC
GGAGCGTTCGAACGTCTCGCGGGCGATGATCTCGAAGATCGAGCGCGGCGAGGCGAGCCCCACCGCAGAACTGCTGAACC
GCCTCGCCACCGGTTTCGGCCTGACGCTGGCGAGCATCTTCGCGGAGGCCGATCCGGGCCTCGATCCGGCGGCGCCCCGC
GTTGCGCGCCGTGCCGAGCAGGCGGAGTGGCGCGATCCAGGCACCGGTTATCTGCGGCGCAATGTCAGCCCGCCGGGCGC
GCCTGCGCTGGAGATCGTCGAGGTGCAGTTCCCCTCCGGCGGCCGTGTCGTCTTCGACGCCTACCACGAGACGCGGATCG
TGCAGCAGCTCTGGCTGCTCGAGGGCGCCATGGAACTCGCGGTCGGCGACGCTACCTTTCATCTTTCCGCCGGAGACTGC
CTCGCCATGACGCTTGATCAGCCGGTCATCTTCCACAATCCCGGCGAGACGCCCGCCCGCTATGCGGTGGTGCTCGCCCG
CCCGGAGACCCGGCGATGA

Upstream 100 bases:

>100_bases
TCGGCAAGCGGCGATCCGCGCCCTTACCGCGATTGACGCCGCAATTTCGTCCACTATGATGGAATCATCGTGATACGATG
ATGATCGACGCGGGGGCGGC

Downstream 100 bases:

>100_bases
ATGTGCGTGCCCTTGACGGTGACGAGGCCCGCGCGGCCGTCCCCGCGCTTGCCGACGTGCTGCTGGATTGCGTGGCAGGC
GGCGCCTCGGTGAGCTTCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MDDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIFAEADPGLDPAAPR
VARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVEVQFPSGGRVVFDAYHETRIVQQLWLLEGAMELAVGDATFHLSAGDC
LAMTLDQPVIFHNPGETPARYAVVLARPETRR

Sequences:

>Translated_192_residues
MDDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIFAEADPGLDPAAPR
VARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVEVQFPSGGRVVFDAYHETRIVQQLWLLEGAMELAVGDATFHLSAGDC
LAMTLDQPVIFHNPGETPARYAVVLARPETRR
>Mature_192_residues
MDDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIFAEADPGLDPAAPR
VARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVEVQFPSGGRVVFDAYHETRIVQQLWLLEGAMELAVGDATFHLSAGDC
LAMTLDQPVIFHNPGETPARYAVVLARPETRR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=190, Percent_Identity=27.3684210526316, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21102; Mature: 21102

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTLASIFAEADPGLDPAAPRVARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVEVQFPSG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCC
GRVVFDAYHETRIVQQLWLLEGAMELAVGDATFHLSAGDCLAMTLDQPVIFHNPGETPAR
CEEEEECHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCEEEEECCCCEEEECCCCCCCC
YAVVLARPETRR
EEEEEECCCCCC
>Mature Secondary Structure
MDDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTLASIFAEADPGLDPAAPRVARRAEQAEWRDPGTGYLRRNVSPPGAPALEIVEVQFPSG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCC
GRVVFDAYHETRIVQQLWLLEGAMELAVGDATFHLSAGDCLAMTLDQPVIFHNPGETPAR
CEEEEECHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCEEEEECCCCEEEECCCCCCCC
YAVVLARPETRR
EEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]