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The map label for this gene is nodT [H]

Identifier: 158424912

GI number: 158424912

Start: 3797270

End: 3798823

Strand: Reverse

Name: nodT [H]

Synonym: AZC_3288

Alternate gene names: 158424912

Gene position: 3798823-3797270 (Counterclockwise)

Preceding gene: 158424915

Following gene: 158424911

Centisome position: 70.74

GC content: 66.54

Gene sequence:

>1554_bases
TTGGGACTCAAGACGACCATGCGGAAACATAAATCTCTCGCCGCCGCCAGCGCATGCGTCAAAGGCGGCGCCCTGGCGGC
ATCACTGCTTCTGTTGCACGGCTGCATGGTCGGTCCGGACTTCACCGCGCCCGATGCCCCGCGGGTCAACGGCTATCTGC
CGGAGGGCAATCCTGCGCCCACCGCCACTGCAGAGGTCCACGGCGGCGCAAGCCAGGTCTTCCTGCGCGGGCGCGACCTG
CCGGGCGAGTGGTGGAAGGTGTTCCGCAACAAGCAGATCGACGCCTTCGTGACCGAGGCCATTCAGAACCATCCCGACGT
CGCTGCGGCCCAGGCGGCATTGCGGGCGGCACGCGAGAATGTGCTGGCGCAGGAGGGCAGTCTCTTCCCGCAGGTGTCGG
CGAGCGGCAGCGGCACGCGGCAGGTGGTCTCCAACGCCTCGCAGAACCAGAGCGGCAACAGCAGCCCCTACAATCTCTAC
AATGCTTCGGTGAGCGTCTCGTATGTGCTCGATGCCTGGGGTGGCACGCGCCGGCAGGTGGAGGCGCTCCAAGCCCAGGC
GGAATATCAGCAGTATCAGCTGGAAGCGACCTATCTGAGCCTCACCGCCAATGTGGTGACGGCGGCCATTTCCGACGCAT
CGCTGCGGGCCCAGATCGACGCCACCAACGACATCATCAAGTCTGAGGAAGAACAGCTCAAGCTGGTGCAGCGCCAGTTC
GAGCTGGGCGCGGTGGCGCAATCCGACGTGCTCTCCCAGCAGTCGAACCTCGCCCAGACACAGGCCACCCTGCCGCCACT
CCAGAAGCAGCTGGCCCAGCAGCGCAACCAGCTGATGGCCTATCTCGGCCGGCTGCCGAGCGAGGATCGCGGCGAACACG
TCAGCCTCTCGAGCCTCACCCTGCCGCGCGACCTGCCGGTGAGCCTGCCCTCCGCGCTGGTGCGGCAGCGGCCGGACATC
GCGGCCGCGGAAGCCACCCTGCACAAGGCGACCGCCACGGTGGGCGTGAATGTGGCCAACATGCTGCCGCAGATCCAGAT
CAGCAGCAGCTATGGCCGCAACGGCCTCACCCCGAGCAGCCTGTTCTCGCCCGGAACGGCCGCTTGGAGCGTCGCGGGCA
GTCTGTCGCAGACGGTGTTCGACGGCGGCACGCTCTATCACGACAAGGAAGCGGCCATCGCCAGCCGCGAACAGGCCTTC
GCCACCTACAAGAGCACGGTCATTTCCGCGTTCCGCGATGTGGCGGACTCGCTGCGTGCCATCGAAGCGGACGCCAATAC
GCTGAAGGCGCAGCTCGCTTATGAGAAGGCGGCGCAGGACAGCGTGAAGATCTCGCGCACCCAGTACATGGCGGGTGCCG
TGACCTATCCCTCCGTGCTGACCTCCGAGCAGAATTACCAGCAGGCCGTGATCGCCCGGGTGAAGGCGCAGGCCCAGCGC
TTCAGCGACACCGCCGCGCTGTTCCAGTCCCTCGGCGGCGGCTGGTGGAACCGTGTCGACCAGACCGCACAATCCCTGCC
CCGGACCAACGCGGGCTATTTCCAGGACCACTGA

Upstream 100 bases:

>100_bases
CGTTCCCATGATTGTTCCCCACCGAACTGAACGGTTTAGTTCTATTGACTCTAACGCAAGCCAAGCTTAGTTCCTAGTCG
AACTGAACGGTTCGGTTCAG

Downstream 100 bases:

>100_bases
GGCCGCCGCCGGCTCGATGCCGGCGTCCGACCCTTGCGACATGACGGCCCCCGAGCGGCCAGGAGAAGCAATCCATGAAG
AAGCGGATGATCATGATGCT

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MGLKTTMRKHKSLAAASACVKGGALAASLLLLHGCMVGPDFTAPDAPRVNGYLPEGNPAPTATAEVHGGASQVFLRGRDL
PGEWWKVFRNKQIDAFVTEAIQNHPDVAAAQAALRAARENVLAQEGSLFPQVSASGSGTRQVVSNASQNQSGNSSPYNLY
NASVSVSYVLDAWGGTRRQVEALQAQAEYQQYQLEATYLSLTANVVTAAISDASLRAQIDATNDIIKSEEEQLKLVQRQF
ELGAVAQSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSEDRGEHVSLSSLTLPRDLPVSLPSALVRQRPDI
AAAEATLHKATATVGVNVANMLPQIQISSSYGRNGLTPSSLFSPGTAAWSVAGSLSQTVFDGGTLYHDKEAAIASREQAF
ATYKSTVISAFRDVADSLRAIEADANTLKAQLAYEKAAQDSVKISRTQYMAGAVTYPSVLTSEQNYQQAVIARVKAQAQR
FSDTAALFQSLGGGWWNRVDQTAQSLPRTNAGYFQDH

Sequences:

>Translated_517_residues
MGLKTTMRKHKSLAAASACVKGGALAASLLLLHGCMVGPDFTAPDAPRVNGYLPEGNPAPTATAEVHGGASQVFLRGRDL
PGEWWKVFRNKQIDAFVTEAIQNHPDVAAAQAALRAARENVLAQEGSLFPQVSASGSGTRQVVSNASQNQSGNSSPYNLY
NASVSVSYVLDAWGGTRRQVEALQAQAEYQQYQLEATYLSLTANVVTAAISDASLRAQIDATNDIIKSEEEQLKLVQRQF
ELGAVAQSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSEDRGEHVSLSSLTLPRDLPVSLPSALVRQRPDI
AAAEATLHKATATVGVNVANMLPQIQISSSYGRNGLTPSSLFSPGTAAWSVAGSLSQTVFDGGTLYHDKEAAIASREQAF
ATYKSTVISAFRDVADSLRAIEADANTLKAQLAYEKAAQDSVKISRTQYMAGAVTYPSVLTSEQNYQQAVIARVKAQAQR
FSDTAALFQSLGGGWWNRVDQTAQSLPRTNAGYFQDH
>Mature_516_residues
GLKTTMRKHKSLAAASACVKGGALAASLLLLHGCMVGPDFTAPDAPRVNGYLPEGNPAPTATAEVHGGASQVFLRGRDLP
GEWWKVFRNKQIDAFVTEAIQNHPDVAAAQAALRAARENVLAQEGSLFPQVSASGSGTRQVVSNASQNQSGNSSPYNLYN
ASVSVSYVLDAWGGTRRQVEALQAQAEYQQYQLEATYLSLTANVVTAAISDASLRAQIDATNDIIKSEEEQLKLVQRQFE
LGAVAQSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSEDRGEHVSLSSLTLPRDLPVSLPSALVRQRPDIA
AAEATLHKATATVGVNVANMLPQIQISSSYGRNGLTPSSLFSPGTAAWSVAGSLSQTVFDGGTLYHDKEAAIASREQAFA
TYKSTVISAFRDVADSLRAIEADANTLKAQLAYEKAAQDSVKISRTQYMAGAVTYPSVLTSEQNYQQAVIARVKAQAQRF
SDTAALFQSLGGGWWNRVDQTAQSLPRTNAGYFQDH

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=471, Percent_Identity=24.416135881104, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI2367348, Length=446, Percent_Identity=24.4394618834081, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 55369; Mature: 55238

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKTTMRKHKSLAAASACVKGGALAASLLLLHGCMVGPDFTAPDAPRVNGYLPEGNPAP
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
TATAEVHGGASQVFLRGRDLPGEWWKVFRNKQIDAFVTEAIQNHPDVAAAQAALRAAREN
CCEEEECCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VLAQEGSLFPQVSASGSGTRQVVSNASQNQSGNSSPYNLYNASVSVSYVLDAWGGTRRQV
HHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCHHHH
EALQAQAEYQQYQLEATYLSLTANVVTAAISDASLRAQIDATNDIIKSEEEQLKLVQRQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCHHHHHHCHHHHHHHHHHHH
ELGAVAQSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSEDRGEHVSLSSLT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
LPRDLPVSLPSALVRQRPDIAAAEATLHKATATVGVNVANMLPQIQISSSYGRNGLTPSS
CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCHHH
LFSPGTAAWSVAGSLSQTVFDGGTLYHDKEAAIASREQAFATYKSTVISAFRDVADSLRA
HCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEADANTLKAQLAYEKAAQDSVKISRTQYMAGAVTYPSVLTSEQNYQQAVIARVKAQAQR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
FSDTAALFQSLGGGWWNRVDQTAQSLPRTNAGYFQDH
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GLKTTMRKHKSLAAASACVKGGALAASLLLLHGCMVGPDFTAPDAPRVNGYLPEGNPAP
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
TATAEVHGGASQVFLRGRDLPGEWWKVFRNKQIDAFVTEAIQNHPDVAAAQAALRAAREN
CCEEEECCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VLAQEGSLFPQVSASGSGTRQVVSNASQNQSGNSSPYNLYNASVSVSYVLDAWGGTRRQV
HHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCHHHH
EALQAQAEYQQYQLEATYLSLTANVVTAAISDASLRAQIDATNDIIKSEEEQLKLVQRQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCHHHHHHCHHHHHHHHHHHH
ELGAVAQSDVLSQQSNLAQTQATLPPLQKQLAQQRNQLMAYLGRLPSEDRGEHVSLSSLT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
LPRDLPVSLPSALVRQRPDIAAAEATLHKATATVGVNVANMLPQIQISSSYGRNGLTPSS
CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCHHH
LFSPGTAAWSVAGSLSQTVFDGGTLYHDKEAAIASREQAFATYKSTVISAFRDVADSLRA
HCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEADANTLKAQLAYEKAAQDSVKISRTQYMAGAVTYPSVLTSEQNYQQAVIARVKAQAQR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
FSDTAALFQSLGGGWWNRVDQTAQSLPRTNAGYFQDH
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]