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The map label for this gene is yjjM [H]

Identifier: 158424909

GI number: 158424909

Start: 3791883

End: 3792887

Strand: Direct

Name: yjjM [H]

Synonym: AZC_3285

Alternate gene names: 158424909

Gene position: 3791883-3792887 (Clockwise)

Preceding gene: 158424897

Following gene: 158424913

Centisome position: 70.62

GC content: 65.97

Gene sequence:

>1005_bases
ATGCGGGGGAACAGCCTTTTCAAGCGCACCTACAACCAGTGTTTGAGCCTGCTCGGCGACCTGCCGCCGGGCGCGCGACT
GGGCTCGGAGGCGCAGCTGGCGCAGGTACTGGAAGTCAGCCGGACGACGGTGCGGGCGGTGCTGGCCGCGCTGGCCGAAG
CCGGCCTCGTGACCGCGGAGGCCGGCCGGCGCCAGCTCGCGCGCCATCCGACGCCGGCCCACTATTTTCCCGAGCCGCAG
ACGGAATCCGTCCGCGCCAGTGTTGAGCGCCAGTTCATGCAGTGGGTGTTGCAGGGCGATTTCCGCCCCGGCCAGCTCAT
CCATTGTGCGGAACTGGCGCGACAGTTCAATACCTCAACCACGGCGATCCGCGAATATCTCAGCCACTTCAGCCACTTCG
GACTTATTGAGCGACGACCTAACAGTGCCTGGGTATTCAAGGGCATCACCGCGGATTTCGCGGCCGAGATCTATGAGATC
CGCGAGATGTTCGAGCTGCGCTCCGCCCAGCGCTTCGCCAGCCTGCCGCCGGAGGCTCCCGCGTGGCGGGAGCTCGATGC
CCTGGAGGCGGAACACCATGCGCTGCTGAAGGAAATCCATGTCCGCTACAGGGATTTCTCCCGCCTCGACGAGCGGCTGC
ACCGGCTGATCCATGACGCCTCGCACAACCGCTTCATGATGGATTTCTACGACGTCATCTCCATGATCTTCCACTACCAT
TACCAGTGGAACAAGGCGGACGAGAAAGAGCGCAACACCGTCGCCATCCACGAACACCTTGCCTATATCGCTGCGCTGCG
CAGCCGCGACGCCCGTGCCATCGAAGCCAAGTGCCGGGCCCATCTGCGCACCGCCCGCTCGACGCTGCTGCGCTCCATCG
ACGCCGGTCCCCTGCGTCCTGGCGCGAGCCTGCCGCTGGATCCGGATCGCCCTCCCCTCGCCCTTCCGGTGGGGCCGTCC
CATTCCAAGGCCAAGCGGTCGCCCGTTGCAGCGAGGCGGCGCTGA

Upstream 100 bases:

>100_bases
TCCATGGTGTGCGAACAGAGTCAATCGGTTTTTTATGCACTAAAATACAAACAGGCATCCCCGCGAAGCGGATGCCCGAA
CGGGAGTGGGACGCTGAATC

Downstream 100 bases:

>100_bases
GGCCGGCGGCCACTCCAAAGAGAAACGGGAGGGGCTTATCCGCCCCTCCCGTTGCCTCTCATTGCCGATCTGCGATCCTC
ACGCGCCGTGTTCGGCCGCG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MRGNSLFKRTYNQCLSLLGDLPPGARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAEAGRRQLARHPTPAHYFPEPQ
TESVRASVERQFMQWVLQGDFRPGQLIHCAELARQFNTSTTAIREYLSHFSHFGLIERRPNSAWVFKGITADFAAEIYEI
REMFELRSAQRFASLPPEAPAWRELDALEAEHHALLKEIHVRYRDFSRLDERLHRLIHDASHNRFMMDFYDVISMIFHYH
YQWNKADEKERNTVAIHEHLAYIAALRSRDARAIEAKCRAHLRTARSTLLRSIDAGPLRPGASLPLDPDRPPLALPVGPS
HSKAKRSPVAARRR

Sequences:

>Translated_334_residues
MRGNSLFKRTYNQCLSLLGDLPPGARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAEAGRRQLARHPTPAHYFPEPQ
TESVRASVERQFMQWVLQGDFRPGQLIHCAELARQFNTSTTAIREYLSHFSHFGLIERRPNSAWVFKGITADFAAEIYEI
REMFELRSAQRFASLPPEAPAWRELDALEAEHHALLKEIHVRYRDFSRLDERLHRLIHDASHNRFMMDFYDVISMIFHYH
YQWNKADEKERNTVAIHEHLAYIAALRSRDARAIEAKCRAHLRTARSTLLRSIDAGPLRPGASLPLDPDRPPLALPVGPS
HSKAKRSPVAARRR
>Mature_334_residues
MRGNSLFKRTYNQCLSLLGDLPPGARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAEAGRRQLARHPTPAHYFPEPQ
TESVRASVERQFMQWVLQGDFRPGQLIHCAELARQFNTSTTAIREYLSHFSHFGLIERRPNSAWVFKGITADFAAEIYEI
REMFELRSAQRFASLPPEAPAWRELDALEAEHHALLKEIHVRYRDFSRLDERLHRLIHDASHNRFMMDFYDVISMIFHYH
YQWNKADEKERNTVAIHEHLAYIAALRSRDARAIEAKCRAHLRTARSTLLRSIDAGPLRPGASLPLDPDRPPLALPVGPS
HSKAKRSPVAARRR

Specific function: May be a positive transcriptional regulator for yjjM and/or yjjN. Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48995005, Length=299, Percent_Identity=32.1070234113712, Blast_Score=164, Evalue=9e-42,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 38118; Mature: 38118

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGNSLFKRTYNQCLSLLGDLPPGARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAE
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AGRRQLARHPTPAHYFPEPQTESVRASVERQFMQWVLQGDFRPGQLIHCAELARQFNTST
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
TAIREYLSHFSHFGLIERRPNSAWVFKGITADFAAEIYEIREMFELRSAQRFASLPPEAP
HHHHHHHHHHHHCCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWRELDALEAEHHALLKEIHVRYRDFSRLDERLHRLIHDASHNRFMMDFYDVISMIFHYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YQWNKADEKERNTVAIHEHLAYIAALRSRDARAIEAKCRAHLRTARSTLLRSIDAGPLRP
HCCCCCCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GASLPLDPDRPPLALPVGPSHSKAKRSPVAARRR
CCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MRGNSLFKRTYNQCLSLLGDLPPGARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAE
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AGRRQLARHPTPAHYFPEPQTESVRASVERQFMQWVLQGDFRPGQLIHCAELARQFNTST
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
TAIREYLSHFSHFGLIERRPNSAWVFKGITADFAAEIYEIREMFELRSAQRFASLPPEAP
HHHHHHHHHHHHCCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWRELDALEAEHHALLKEIHVRYRDFSRLDERLHRLIHDASHNRFMMDFYDVISMIFHYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YQWNKADEKERNTVAIHEHLAYIAALRSRDARAIEAKCRAHLRTARSTLLRSIDAGPLRP
HCCCCCCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GASLPLDPDRPPLALPVGPSHSKAKRSPVAARRR
CCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]