| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is fct [H]
Identifier: 158424864
GI number: 158424864
Start: 3735087
End: 3737552
Strand: Direct
Name: fct [H]
Synonym: AZC_3240
Alternate gene names: 158424864
Gene position: 3735087-3737552 (Clockwise)
Preceding gene: 158424863
Following gene: 158424865
Centisome position: 69.56
GC content: 63.26
Gene sequence:
>2466_bases GTGCAAACGCGGACGGCCCATACAGAGCGGAATTTCATTAAGCCGCAGACCGCCTGCCATTCCTGGGTGGGTACCCTGCT GCTGGCGTCGACCGCGCTGGTGGCGATCGCGCCGACCACCGCCCTTGCCCAGAGCGCGCCCGCCGTCACCCAAGCGGGGG CCATTGCCTTCTCCATTCCCGCAGGTCCGCTGTCAGCGGCGCTGACGCAGTGGGCGACCACGTCCGGCATGCGCGTGCTG TTCTCCAGCGAGATCACGCGTGACCTGAAGACTTCGGGTGTCAACGGCACAATGACCGCAGACGTTGCCCTCGGGCGGCT GCTGACGGGAACAGGCCTCGGCTACAGTTTCACCGGGCCGACGACCGTTGCCATCCGGCGCAACGTGGACGTCCTGCCTG CGACCAATATCTCCAGCGAGGGCACCATCGTTCTCGACACCATCGACGTGCAGGGCGACGGCACCTTCGGCTATATCGCC ACCCGGAGCGATGCCGGCACGAAGACCAACACGCCGCTCATCGAGACGCCGCGCTCGGTCTCCGTGGTAACCCGCCAGGA GATGGATGACCGCGGCGTCCAGAACCTGCCCGAGGCAGTGCGCTACACCGCTGGCGTGACCACCGGCGCATTCGGCTATG ATCCGCGCTTCGATCAGATCTACATCCGCGGCTTCGCCGTGACCACGCTCGGCGATTATCGCGACGGCCTGCGCCAGTAT GCCGGCAGCTACGCAACGTTCTCCACGGAGACCTACGGCCTTGAGCGTGTCGACGTGATCAAGGGACCGGCTTCCGTGCT CTATGGCCAGGGCACGCCCGGCGGCCTGATCGACCGCATCTCCAAAACGCCGACCGGGCAGCCCATCCACGAGATCCTCG GCGAGGTCGGGACGTTCGGACACCTGCAGGCGGCGTTCGACCTCGGAGGCACCGCGCCCGATAACAAGAACTTCCTCTAT CGCATTGTCGGCGTCGGCCGGACCGGGGATACCAATTACGACATCGCCGACGACGAGCTCTATCTTGCGCCCTCCTTCAC ATGGCGCAATGACACGACCTCGCTCACCGTCCTCGCCCTCGCGCAGAAGGACGAGACCGATGCAAACGTGGCCATGATCA ACAAGAACAGCCACGTCACCAAGGTACGTGCCAGCGATCCGGATTACGACTATCAGAAGCAGACACAGTATCAGGTCGGC TACAAGTTCGAACACCAGTTCAACGACATGTTCGAGTTTCGGCAGAACCTGCGCTACGGCCAGGCGGACCTGACCGGACG CTATCTGACCGGCGGCGTCACGGGCGGCGGGTTCGCCAGCGCCGCTTCCCCCATCTACCGGCGCGGCTCGGCGGCGGTGG AGGAGGATCTGTCTTCCTTCCAGGTGGACAACCAGCTTCAGATCAATGCCGCGACCGGGCCGCTTGGACACACGCTGCTG ATCGGCCTCGATTATGGCGAGATGCATAGCAATTTCGGCAGCGGCACCGCCGCAGCCAACGCCGCCTATGCCATCAATAT CCTCGCTCCCTATTACGGCATCACGGGGCCCACTCCAGCAATCAACACCCGCACGAACACGGACTTCGATCAGCTCGGCA TCTATGCCCAGGACCAGATCGCCTGGGGCAATTGGCGCTTCAACATCAGCGGACGTCAGGACTGGACCAGCCGCACGCAG GTCAACGGCTATACCGGCCTCGTGACCGGCGACCGGGAGGACAACGCCTTTACCTGGAGCACCGGCCTCCTCTATCTCTT CGACAATGGCTGGGCACCCTATGTGAGCTATGCGACCTCGTTCCAGCCCACCAGCAACCTCGGCTATGAGGGCCAGATTC TCGCCCCAGCGACCGCCGAACAGTATGAGGCCGGCTTAAAATACATCTCGCCAGACGACCGCATCTCGATGACGCTGGCC GGCTACAACCTGAAAGAGCAGAACGCTCCGAAATACGCCGGCATCAACCCGACCAGCGGCCTCCTCTATTACCAGTCCAT CGGCGAGATCCAGGTGCGTGGCTTCGAGTTCGAGGGACGGCTGCGCCTGGCGAACGGCGTCGAGGCAATTGCCTCCTACA CCTATGCGGACGCCGAGATTCTCCAGTCCGCAACCGCGGCAGAGGTCGGGCGCGTACCGGCGGTTACGCCACGCAATGTC GCAACGGCCTGGCTGAACTACACGGTGCAGGACGGCCCATTGTTCGGACTCAGCGGTGGCGCCGGCCTGCGGTACATCGG CCAGACTTACGGCAACAATACCAATACCGTGATCAACAGCAGCTACACCATGTTCGATGCCTCACTGCGCTACGACCTCG GCAAGCTGAACCAGAAGCTCACGGGCTACAGCCTGTCCGTGAGTGCCACGAACATCGCCAACGTGATGCCCGAAATCTGC AACTCCGGCACCTGCTATCTGGGGCAGGGCCGCACGGTGGTCGGCACGCTCAAATACAAGTGGTGA
Upstream 100 bases:
>100_bases TTGTTTGCTGAGCGGGTGTCGCATCCCGCGCCTCCGGCGTCTTCCCAAACGAACGGCCTTTGCGGCCACGATGTGCGGCA GATCAGTCTGGGGGTTTTAA
Downstream 100 bases:
>100_bases CAGGCTCCAGCGGAGGCTCCGCATGACAGCGAACCAGACGGCACGGCCGGCTTCCCGCACCCGCGATCCCCGGATCGACG CGGTGCGGGGCATCGCCCTG
Product: TonB-dependent siderophore receptor precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MQTRTAHTERNFIKPQTACHSWVGTLLLASTALVAIAPTTALAQSAPAVTQAGAIAFSIPAGPLSAALTQWATTSGMRVL FSSEITRDLKTSGVNGTMTADVALGRLLTGTGLGYSFTGPTTVAIRRNVDVLPATNISSEGTIVLDTIDVQGDGTFGYIA TRSDAGTKTNTPLIETPRSVSVVTRQEMDDRGVQNLPEAVRYTAGVTTGAFGYDPRFDQIYIRGFAVTTLGDYRDGLRQY AGSYATFSTETYGLERVDVIKGPASVLYGQGTPGGLIDRISKTPTGQPIHEILGEVGTFGHLQAAFDLGGTAPDNKNFLY RIVGVGRTGDTNYDIADDELYLAPSFTWRNDTTSLTVLALAQKDETDANVAMINKNSHVTKVRASDPDYDYQKQTQYQVG YKFEHQFNDMFEFRQNLRYGQADLTGRYLTGGVTGGGFASAASPIYRRGSAAVEEDLSSFQVDNQLQINAATGPLGHTLL IGLDYGEMHSNFGSGTAAANAAYAINILAPYYGITGPTPAINTRTNTDFDQLGIYAQDQIAWGNWRFNISGRQDWTSRTQ VNGYTGLVTGDREDNAFTWSTGLLYLFDNGWAPYVSYATSFQPTSNLGYEGQILAPATAEQYEAGLKYISPDDRISMTLA GYNLKEQNAPKYAGINPTSGLLYYQSIGEIQVRGFEFEGRLRLANGVEAIASYTYADAEILQSATAAEVGRVPAVTPRNV ATAWLNYTVQDGPLFGLSGGAGLRYIGQTYGNNTNTVINSSYTMFDASLRYDLGKLNQKLTGYSLSVSATNIANVMPEIC NSGTCYLGQGRTVVGTLKYKW
Sequences:
>Translated_821_residues MQTRTAHTERNFIKPQTACHSWVGTLLLASTALVAIAPTTALAQSAPAVTQAGAIAFSIPAGPLSAALTQWATTSGMRVL FSSEITRDLKTSGVNGTMTADVALGRLLTGTGLGYSFTGPTTVAIRRNVDVLPATNISSEGTIVLDTIDVQGDGTFGYIA TRSDAGTKTNTPLIETPRSVSVVTRQEMDDRGVQNLPEAVRYTAGVTTGAFGYDPRFDQIYIRGFAVTTLGDYRDGLRQY AGSYATFSTETYGLERVDVIKGPASVLYGQGTPGGLIDRISKTPTGQPIHEILGEVGTFGHLQAAFDLGGTAPDNKNFLY RIVGVGRTGDTNYDIADDELYLAPSFTWRNDTTSLTVLALAQKDETDANVAMINKNSHVTKVRASDPDYDYQKQTQYQVG YKFEHQFNDMFEFRQNLRYGQADLTGRYLTGGVTGGGFASAASPIYRRGSAAVEEDLSSFQVDNQLQINAATGPLGHTLL IGLDYGEMHSNFGSGTAAANAAYAINILAPYYGITGPTPAINTRTNTDFDQLGIYAQDQIAWGNWRFNISGRQDWTSRTQ VNGYTGLVTGDREDNAFTWSTGLLYLFDNGWAPYVSYATSFQPTSNLGYEGQILAPATAEQYEAGLKYISPDDRISMTLA GYNLKEQNAPKYAGINPTSGLLYYQSIGEIQVRGFEFEGRLRLANGVEAIASYTYADAEILQSATAAEVGRVPAVTPRNV ATAWLNYTVQDGPLFGLSGGAGLRYIGQTYGNNTNTVINSSYTMFDASLRYDLGKLNQKLTGYSLSVSATNIANVMPEIC NSGTCYLGQGRTVVGTLKYKW >Mature_821_residues MQTRTAHTERNFIKPQTACHSWVGTLLLASTALVAIAPTTALAQSAPAVTQAGAIAFSIPAGPLSAALTQWATTSGMRVL FSSEITRDLKTSGVNGTMTADVALGRLLTGTGLGYSFTGPTTVAIRRNVDVLPATNISSEGTIVLDTIDVQGDGTFGYIA TRSDAGTKTNTPLIETPRSVSVVTRQEMDDRGVQNLPEAVRYTAGVTTGAFGYDPRFDQIYIRGFAVTTLGDYRDGLRQY AGSYATFSTETYGLERVDVIKGPASVLYGQGTPGGLIDRISKTPTGQPIHEILGEVGTFGHLQAAFDLGGTAPDNKNFLY RIVGVGRTGDTNYDIADDELYLAPSFTWRNDTTSLTVLALAQKDETDANVAMINKNSHVTKVRASDPDYDYQKQTQYQVG YKFEHQFNDMFEFRQNLRYGQADLTGRYLTGGVTGGGFASAASPIYRRGSAAVEEDLSSFQVDNQLQINAATGPLGHTLL IGLDYGEMHSNFGSGTAAANAAYAINILAPYYGITGPTPAINTRTNTDFDQLGIYAQDQIAWGNWRFNISGRQDWTSRTQ VNGYTGLVTGDREDNAFTWSTGLLYLFDNGWAPYVSYATSFQPTSNLGYEGQILAPATAEQYEAGLKYISPDDRISMTLA GYNLKEQNAPKYAGINPTSGLLYYQSIGEIQVRGFEFEGRLRLANGVEAIASYTYADAEILQSATAAEVGRVPAVTPRNV ATAWLNYTVQDGPLFGLSGGAGLRYIGQTYGNNTNTVINSSYTMFDASLRYDLGKLNQKLTGYSLSVSATNIANVMPEIC NSGTCYLGQGRTVVGTLKYKW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=698, Percent_Identity=34.0974212034384, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1787024, Length=732, Percent_Identity=26.0928961748634, Blast_Score=117, Evalue=4e-27, Organism=Escherichia coli, GI1787344, Length=759, Percent_Identity=22.266139657444, Blast_Score=102, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88509; Mature: 88509
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTRTAHTERNFIKPQTACHSWVGTLLLASTALVAIAPTTALAQSAPAVTQAGAIAFSIP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCCHHHCCEEEEECC AGPLSAALTQWATTSGMRVLFSSEITRDLKTSGVNGTMTADVALGRLLTGTGLGYSFTGP CCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEECCC TTVAIRRNVDVLPATNISSEGTIVLDTIDVQGDGTFGYIATRSDAGTKTNTPLIETPRSV EEEEEECCCEEEECCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCE SVVTRQEMDDRGVQNLPEAVRYTAGVTTGAFGYDPRFDQIYIRGFAVTTLGDYRDGLRQY EEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHH AGSYATFSTETYGLERVDVIKGPASVLYGQGTPGGLIDRISKTPTGQPIHEILGEVGTFG CCCEEEEECCCCCCEEEEEECCCHHEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCC HLQAAFDLGGTAPDNKNFLYRIVGVGRTGDTNYDIADDELYLAPSFTWRNDTTSLTVLAL CEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCEEECCCCCEEEEEEE AQKDETDANVAMINKNSHVTKVRASDPDYDYQKQTQYQVGYKFEHQFNDMFEFRQNLRYG ECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEECEEEHHHHHHHHHHHHHCCCC QADLTGRYLTGGVTGGGFASAASPIYRRGSAAVEEDLSSFQVDNQLQINAATGPLGHTLL CCCCCCEEEECCCCCCCCHHHCCHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEE IGLDYGEMHSNFGSGTAAANAAYAINILAPYYGITGPTPAINTRTNTDFDQLGIYAQDQI EEECHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEECEE AWGNWRFNISGRQDWTSRTQVNGYTGLVTGDREDNAFTWSTGLLYLFDNGWAPYVSYATS EECCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEEEECCCCCHHHHCCC FQPTSNLGYEGQILAPATAEQYEAGLKYISPDDRISMTLAGYNLKEQNAPKYAGINPTSG CCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC LLYYQSIGEIQVRGFEFEGRLRLANGVEAIASYTYADAEILQSATAAEVGRVPAVTPRNV EEEEEECCCEEEEEEEECCCEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC ATAWLNYTVQDGPLFGLSGGAGLRYIGQTYGNNTNTVINSSYTMFDASLRYDLGKLNQKL EEEEEEEEEECCCEEEECCCCCCEEEHHHHCCCCCEEEECCEEEEECHHHHHHHHHHHHH TGYSLSVSATNIANVMPEICNSGTCYLGQGRTVVGTLKYKW CCEEEEEEHHHHHHHHHHHHCCCCEEEECCCEEEEEEEECC >Mature Secondary Structure MQTRTAHTERNFIKPQTACHSWVGTLLLASTALVAIAPTTALAQSAPAVTQAGAIAFSIP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCCHHHCCEEEEECC AGPLSAALTQWATTSGMRVLFSSEITRDLKTSGVNGTMTADVALGRLLTGTGLGYSFTGP CCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEECCC TTVAIRRNVDVLPATNISSEGTIVLDTIDVQGDGTFGYIATRSDAGTKTNTPLIETPRSV EEEEEECCCEEEECCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCE SVVTRQEMDDRGVQNLPEAVRYTAGVTTGAFGYDPRFDQIYIRGFAVTTLGDYRDGLRQY EEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHH AGSYATFSTETYGLERVDVIKGPASVLYGQGTPGGLIDRISKTPTGQPIHEILGEVGTFG CCCEEEEECCCCCCEEEEEECCCHHEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCC HLQAAFDLGGTAPDNKNFLYRIVGVGRTGDTNYDIADDELYLAPSFTWRNDTTSLTVLAL CEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCEEECCCCCEEEEEEE AQKDETDANVAMINKNSHVTKVRASDPDYDYQKQTQYQVGYKFEHQFNDMFEFRQNLRYG ECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEECEEEHHHHHHHHHHHHHCCCC QADLTGRYLTGGVTGGGFASAASPIYRRGSAAVEEDLSSFQVDNQLQINAATGPLGHTLL CCCCCCEEEECCCCCCCCHHHCCHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEE IGLDYGEMHSNFGSGTAAANAAYAINILAPYYGITGPTPAINTRTNTDFDQLGIYAQDQI EEECHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEECEE AWGNWRFNISGRQDWTSRTQVNGYTGLVTGDREDNAFTWSTGLLYLFDNGWAPYVSYATS EECCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEEEECCCCCHHHHCCC FQPTSNLGYEGQILAPATAEQYEAGLKYISPDDRISMTLAGYNLKEQNAPKYAGINPTSG CCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC LLYYQSIGEIQVRGFEFEGRLRLANGVEAIASYTYADAEILQSATAAEVGRVPAVTPRNV EEEEEECCCEEEEEEEECCCEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC ATAWLNYTVQDGPLFGLSGGAGLRYIGQTYGNNTNTVINSSYTMFDASLRYDLGKLNQKL EEEEEEEEEECCCEEEECCCCCCEEEHHHHCCCCCEEEECCEEEEECHHHHHHHHHHHHH TGYSLSVSATNIANVMPEICNSGTCYLGQGRTVVGTLKYKW CCEEEEEEHHHHHHHHHHHHCCCCEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]