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The map label for this gene is fecI [H]

Identifier: 158424862

GI number: 158424862

Start: 3733232

End: 3733882

Strand: Direct

Name: fecI [H]

Synonym: AZC_3238

Alternate gene names: 158424862

Gene position: 3733232-3733882 (Clockwise)

Preceding gene: 158424859

Following gene: 158424863

Centisome position: 69.52

GC content: 62.83

Gene sequence:

>651_bases
TTGAGTTATCCAATTCATGCGCCTTTGCGCTTTATGCGCAGTCCATTCGTTGCGAGCGTCAATCGGTGGGCGATGAAGCT
CGCTGTAGCCTTGCAGGCCGGCATGACGATCTCCGACCAACCGTCGACGGCGGTCTCTGATCTTGATGCGATATTCCGGC
TCTATCACCGGGAGCTGAACCGCTTCGCCTATCGCAAGCTGGGCGACCGTGAAGCCGCGGCCGACGTCGTGCAGGACGCC
TTTGTCCGCTACCTGTCGGCGGACGCTCAGCGCGCGGACACGGCACGTCTGGACAGCCCTCGCTTCTTCCTGTGGCGCAT
CGTCGGCAACTTGATGATCGACACCATCCGGCGCAAGCGTCGGCAGGGCATACATGCGACATGGGACGAGATCACGGAGG
ACGTGGTCGACCCGGCTCCGCTCCCCGACCGACTGCTGGAGACCCGTGAGGAGTTCCGGCTGGTGAAAGAGGCGCTGGAG
ACACTCTCGCCCAATTGCCGGCAGGCGTTGCTGCTCAACCGTGTGGAAGGCCTGACCCACGCGCAGATCGCCGGTCGGCT
GGGTGTATCCCCGAGCATGGTTTCGAAATACATCATGTCCGCGCTGCGCCGTTGCATGAACGCCCTTGCGGCGCCAGATG
CTGCGCTGTGA

Upstream 100 bases:

>100_bases
ATTATTTTCTGCATGGGGGCAATCGGGCCTCGGCACAGCACGGAAAGGACAGCTAAGATTGGAATGAATATAAATCATTA
CATTTGAATGTAACGCTCTA

Downstream 100 bases:

>100_bases
TCACATTCTCTTGTTTTTGCATCTCTACGGTAGGGACGTGCGGATCTCGATCGTCTTCTCGTGCAAGGACACAGTTAATC
CGCACGCGACCATGACACGC

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSYPIHAPLRFMRSPFVASVNRWAMKLAVALQAGMTISDQPSTAVSDLDAIFRLYHRELNRFAYRKLGDREAAADVVQDA
FVRYLSADAQRADTARLDSPRFFLWRIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALE
TLSPNCRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCMNALAAPDAAL

Sequences:

>Translated_216_residues
MSYPIHAPLRFMRSPFVASVNRWAMKLAVALQAGMTISDQPSTAVSDLDAIFRLYHRELNRFAYRKLGDREAAADVVQDA
FVRYLSADAQRADTARLDSPRFFLWRIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALE
TLSPNCRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCMNALAAPDAAL
>Mature_215_residues
SYPIHAPLRFMRSPFVASVNRWAMKLAVALQAGMTISDQPSTAVSDLDAIFRLYHRELNRFAYRKLGDREAAADVVQDAF
VRYLSADAQRADTARLDSPRFFLWRIVGNLMIDTIRRKRRQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALET
LSPNCRQALLLNRVEGLTHAQIAGRLGVSPSMVSKYIMSALRRCMNALAAPDAAL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=171, Percent_Identity=29.2397660818713, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 24439; Mature: 24307

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYPIHAPLRFMRSPFVASVNRWAMKLAVALQAGMTISDQPSTAVSDLDAIFRLYHRELN
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RFAYRKLGDREAAADVVQDAFVRYLSADAQRADTARLDSPRFFLWRIVGNLMIDTIRRKR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALETLSPNCRQALLLNRVEGLTH
HCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHH
AQIAGRLGVSPSMVSKYIMSALRRCMNALAAPDAAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SYPIHAPLRFMRSPFVASVNRWAMKLAVALQAGMTISDQPSTAVSDLDAIFRLYHRELN
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
RFAYRKLGDREAAADVVQDAFVRYLSADAQRADTARLDSPRFFLWRIVGNLMIDTIRRKR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RQGIHATWDEITEDVVDPAPLPDRLLETREEFRLVKEALETLSPNCRQALLLNRVEGLTH
HCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHH
AQIAGRLGVSPSMVSKYIMSALRRCMNALAAPDAAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]