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The map label for this gene is cph2 [H]

Identifier: 158424750

GI number: 158424750

Start: 3582439

End: 3583959

Strand: Reverse

Name: cph2 [H]

Synonym: AZC_3126

Alternate gene names: 158424750

Gene position: 3583959-3582439 (Counterclockwise)

Preceding gene: 158424751

Following gene: 158424749

Centisome position: 66.74

GC content: 67.59

Gene sequence:

>1521_bases
TTGAGCATTACGGACGAGAAGGCAGGGCGGCAGGGGGCGTCTCGCTTCGTCTGGATCAACGCCCCCGTTTTCGTCTGTCT
TCTGGCATGCGCGCTCGTACTGTTTACGCTGCGGCAGTATTCGATCTTCTATTACGATGCCGCCAAAGACGAGGCCATCG
CCGAGGCGCAGGATACGATCCGCCGGGTCGTTCTGGACATCTCCCAGACCTTCTATTCCTACGACAGCATCCTGAAATCG
GCGATCGCCGTCCTTGAGGACGAGGCCATCGCCACGCTCGCTCCGGACGTGCAGGACCGTCTGCTGGCCCGCATGGTGGT
CCAGTTCCCCTATGTGCGCTCCATCGTCGTGCTCACCCCGAGCGGGACCGTCCGCAACTCCTCCATCAGCGGCACGCCTG
TACAGGACGATTACGGCGGATCGGACTTCTTCCGGGAGCAGGTCAGCGGCGCGCTGGTGGGGCCCTACATGGCCCTGTTC
AGCCGGGAGGGTCTCAAGGGCCTCGAATATCAGGTGGCCATCAGCCGCCGCATCACCTATGCGGGCCAGTTCCGCGGGGT
GGCCGTGGTGTTCGTGCGGCTGCGGGACTTCCGCGACCAGTTCACCAACATCAACATCGGCGGCGGCAATACGCTCGTTC
TGGTCCACGACAGCGGGCAGATCCTGACGCGCAAGCCCTCGCGCGACGGGCTCGGCGACTTCGGCACCGCCGTCTCGCCG
TCCAAGCTGGCGCGACTTCAGCGCACCAGCGAGGGCTCCTATTTCGACGTCTCGCGGCTCGATGGCCGCCAGCGGCTGTT
CGTGTTCCAGCGGGTGCCGGAATGGCCGCTCATGCTGGTGGTGGGCACGCCGGTGGATGCCATCGATGCCGAATGGCGCC
AGCGCATCGCCATCGCCGGATCTGCGAGCGCCCTCAGTTGCTTCGCGCTGGCCGTGCTCGGCTTCAGGCTGCGGCGCGAG
CGCATCAAGCGCGCGGAGGCGGAGGCCGCGCTCGAACAGCTCTCCGTCACCGACTTCCTGACCGGCCTTGCCAACCGGCG
GCGGTTCGACGAGGTGGTGCAGCGGGAGTTCCGCCGCGCCGTGCGCACCGACGGCTGGCTCTCGGTGGTCATCATCGATG
CGGACCACTTCAAGGCGCTCAACGACCGCTTCGGGCATTCGGCTGGCGACGAGACGCTGAAGATGATCGCCACCGCCATC
TCCTCCTGCGCCCGCCGCGCCAGCGACCTCGGCGCGCGCCTCGGTGGCGAGGAGTTCGCGATCGTGCTGCCGGACACGTC
CGCTGCCGCCGCCTATGAGCTGACCGAACGCATCCGCCGGACCATGGAGGCCCACGCCTTCAATCCGGACGGCCCCCCGG
CCACCACGCTGAGCGCGGGCATCGCCTCCACCAAGGACCGCCCGGCGCCGGAGAGCGTGCGTGCCCTCATCGAGGCGGCC
GATCAGGCGCTGTACCGGGCGAAGAACGCCGGGCGGAACCGCACGGAACTTGCCGCATCCCTGACGGTGAGTGCGGCCTG
A

Upstream 100 bases:

>100_bases
TTCACCCCGGAGAAAGTGTCTTCTATCCTTCACACAGAGGTTCTAGGTGTCGGCCTCCCGCCGGACCGGAGTCCCGGCTG
AGTGCCGCTGAGGGATTTCC

Downstream 100 bases:

>100_bases
CGCCTCTGGCCTGCGGCCCTGTTCTTGCTTGCGGTGGAGGAGGGACGGGGCAATTGTCGCGAAGGCGACAGGAGGCCGGA
ATGGGGCAGGCGGCGGAACG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSITDEKAGRQGASRFVWINAPVFVCLLACALVLFTLRQYSIFYYDAAKDEAIAEAQDTIRRVVLDISQTFYSYDSILKS
AIAVLEDEAIATLAPDVQDRLLARMVVQFPYVRSIVVLTPSGTVRNSSISGTPVQDDYGGSDFFREQVSGALVGPYMALF
SREGLKGLEYQVAISRRITYAGQFRGVAVVFVRLRDFRDQFTNINIGGGNTLVLVHDSGQILTRKPSRDGLGDFGTAVSP
SKLARLQRTSEGSYFDVSRLDGRQRLFVFQRVPEWPLMLVVGTPVDAIDAEWRQRIAIAGSASALSCFALAVLGFRLRRE
RIKRAEAEAALEQLSVTDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMIATAI
SSCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFNPDGPPATTLSAGIASTKDRPAPESVRALIEAA
DQALYRAKNAGRNRTELAASLTVSAA

Sequences:

>Translated_506_residues
MSITDEKAGRQGASRFVWINAPVFVCLLACALVLFTLRQYSIFYYDAAKDEAIAEAQDTIRRVVLDISQTFYSYDSILKS
AIAVLEDEAIATLAPDVQDRLLARMVVQFPYVRSIVVLTPSGTVRNSSISGTPVQDDYGGSDFFREQVSGALVGPYMALF
SREGLKGLEYQVAISRRITYAGQFRGVAVVFVRLRDFRDQFTNINIGGGNTLVLVHDSGQILTRKPSRDGLGDFGTAVSP
SKLARLQRTSEGSYFDVSRLDGRQRLFVFQRVPEWPLMLVVGTPVDAIDAEWRQRIAIAGSASALSCFALAVLGFRLRRE
RIKRAEAEAALEQLSVTDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMIATAI
SSCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFNPDGPPATTLSAGIASTKDRPAPESVRALIEAA
DQALYRAKNAGRNRTELAASLTVSAA
>Mature_505_residues
SITDEKAGRQGASRFVWINAPVFVCLLACALVLFTLRQYSIFYYDAAKDEAIAEAQDTIRRVVLDISQTFYSYDSILKSA
IAVLEDEAIATLAPDVQDRLLARMVVQFPYVRSIVVLTPSGTVRNSSISGTPVQDDYGGSDFFREQVSGALVGPYMALFS
REGLKGLEYQVAISRRITYAGQFRGVAVVFVRLRDFRDQFTNINIGGGNTLVLVHDSGQILTRKPSRDGLGDFGTAVSPS
KLARLQRTSEGSYFDVSRLDGRQRLFVFQRVPEWPLMLVVGTPVDAIDAEWRQRIAIAGSASALSCFALAVLGFRLRRER
IKRAEAEAALEQLSVTDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMIATAIS
SCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFNPDGPPATTLSAGIASTKDRPAPESVRALIEAAD
QALYRAKNAGRNRTELAASLTVSAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=40.7185628742515, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=36.5168539325843, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=41.875, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082007, Length=192, Percent_Identity=35.4166666666667, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=37.6543209876543, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=36.2068965517241, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=32.5153374233129, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=34.9693251533742, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=29.8136645962733, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.9341317365269, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=35.5421686746988, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=33.1325301204819, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55539; Mature: 55408

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITDEKAGRQGASRFVWINAPVFVCLLACALVLFTLRQYSIFYYDAAKDEAIAEAQDTI
CCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHH
RRVVLDISQTFYSYDSILKSAIAVLEDEAIATLAPDVQDRLLARMVVQFPYVRSIVVLTP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC
SGTVRNSSISGTPVQDDYGGSDFFREQVSGALVGPYMALFSREGLKGLEYQVAISRRITY
CCCEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEHHHEEE
AGQFRGVAVVFVRLRDFRDQFTNINIGGGNTLVLVHDSGQILTRKPSRDGLGDFGTAVSP
CCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCH
SKLARLQRTSEGSYFDVSRLDGRQRLFVFQRVPEWPLMLVVGTPVDAIDAEWRQRIAIAG
HHHHHHHHCCCCCEEEHHHCCCCCEEEHHHCCCCCCEEEEECCCCHHHCHHHHHHEEECC
SASALSCFALAVLGFRLRRERIKRAEAEAALEQLSVTDFLTGLANRRRFDEVVQREFRRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMIATAISSCARRASDLGARLGGEEFA
HCCCCCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
IVLPDTSAAAAYELTERIRRTMEAHAFNPDGPPATTLSAGIASTKDRPAPESVRALIEAA
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH
DQALYRAKNAGRNRTELAASLTVSAA
HHHHHHHHHCCCCHHHHHHEEEEECC
>Mature Secondary Structure 
SITDEKAGRQGASRFVWINAPVFVCLLACALVLFTLRQYSIFYYDAAKDEAIAEAQDTI
CCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHH
RRVVLDISQTFYSYDSILKSAIAVLEDEAIATLAPDVQDRLLARMVVQFPYVRSIVVLTP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC
SGTVRNSSISGTPVQDDYGGSDFFREQVSGALVGPYMALFSREGLKGLEYQVAISRRITY
CCCEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEHHHEEE
AGQFRGVAVVFVRLRDFRDQFTNINIGGGNTLVLVHDSGQILTRKPSRDGLGDFGTAVSP
CCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCH
SKLARLQRTSEGSYFDVSRLDGRQRLFVFQRVPEWPLMLVVGTPVDAIDAEWRQRIAIAG
HHHHHHHHCCCCCEEEHHHCCCCCEEEHHHCCCCCCEEEEECCCCHHHCHHHHHHEEECC
SASALSCFALAVLGFRLRRERIKRAEAEAALEQLSVTDFLTGLANRRRFDEVVQREFRRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRTDGWLSVVIIDADHFKALNDRFGHSAGDETLKMIATAISSCARRASDLGARLGGEEFA
HCCCCCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
IVLPDTSAAAAYELTERIRRTMEAHAFNPDGPPATTLSAGIASTKDRPAPESVRALIEAA
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH
DQALYRAKNAGRNRTELAASLTVSAA
HHHHHHHHHCCCCHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]