| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is nfdA [H]
Identifier: 158424715
GI number: 158424715
Start: 3537394
End: 3539265
Strand: Direct
Name: nfdA [H]
Synonym: AZC_3091
Alternate gene names: 158424715
Gene position: 3537394-3539265 (Clockwise)
Preceding gene: 158424714
Following gene: 158424716
Centisome position: 65.88
GC content: 67.63
Gene sequence:
>1872_bases GTGACCGCCGACCTCATTCTCCACAACGGCAAGATCACCACGCTCGACCGGACCAATCCGGTGGCGAGCGCCGTCGCCAT CAAGGACGGCACCTTCCTCGCCGTCGGCACCGATGCCGAGGCCATGGCCCATGCCGGCCCCACGACGCGCAAGGTGGACC TCAAGGGCCGCAGCGTCCTGCCGGGTCTCATCGACAACCACCTGCACATCATCCGCGGCGGCCTGAATTTCAACATGGAG CTGCGGTGGGACGGCATGCGCTCGCTGGCCGACGCCATGGACATGCTGAAGCGGCAGGTGGCCGTGACCCCGCCGCCGCA ATGGGTGCGGGTGGTGGGCGGCTTCACCGAGCACCAGTTCGCCGAAAAGCGCCTGCCGACCATCGCGGAGCTGAACGCGG TGGCCCCCGAGACGCCGGTCTTCATCCTGCACCTCTATGACCGTGCCCTGCTCAATGCCGCCGCTTTGCGCGCGGTGGGC TACACGAAGGACACGCCCGAGCCTCCCGGCGGCGAGATCACCCGCGATGCCGCCGGCAATCCCACCGGCCTCCTGCTGGC GCGGCCCAATGCGGCGATCCTCTATGCGACCCTCGCCAAGGGGCCGAAGCTGCCTTTTGACTATCAGCTCAACTCCACCC GCCACTTCATGCGCGAGTTGAACCGCCTCGGCGTCACCGGCGCCATCGATGCGGGCGGCGGCTTCCAGAACTATCCCGAC GATTATGCGGTGATCCAGAAGCTCGCCGACGACAACCAGCTCACCATCCGCCTCGCCTACAACCTCTTCACGCAGAAGCC GAAGCAGGAGAAGGAGGACTTCCTCAACTGGACGAAGACCTCCAAGTACAAGCAGGGTAGCGACTATTTCCGCCACAACG GCGCGGGCGAGATGCTGGTCTTCTCCGCCGCCGACTTCGAGGACTTCCGCGAGCCGCGTCCGGACATGCCGCCCGAAATG GAAGGCGACCTCGAGGGCGTGGTCCGCATCCTCGCCGAGAACCGCTGGCCGTGGCGCCTGCACGCCACCTATGACGAGAC CATCTCCCGCGCCCTCGACGTGTTCGAGACCGTCAACAAGGACGTGCCGCTCGCGGGACTCAACTGGTTCTTCGACCATG CGGAGACCATTTCCGAGCGCTCCATCGACCGCATCGCGGCGCTCGGCGGCGGCATCGCCGTGCAGCACCGCATGGCCTAT CAGGGCGAGTATTTCGTGGAGCGTTACGGCGCCGCCGCCGCCGAGGCGACCCCGCCAGTTGCGCGGATGCTCGACAAGGG CGTGAAGGTCTCCGCCGGCACCGACGCCACCCGTGTCGCCTCCTATAATCCGTGGGTCTCGCTTTCCTGGCTGGTCACCG GCCAGACCGTGGGCGGCCTGCGCCTCTATCCCCGCCACAACTGCCTCGACCGCGAGACGGCCCTGCGCATGTGGACGGAG AAGGTGACGTGGTTCTCCAATGAGGAGGGCCGCAAGGGCCAGATCGTCGCCGGCCAGTTCGCCGACCTCATCGTGCCGGA CCGTGACTTCTTCTCCTGCCCGGAGGCGGACATCGCCCATATGTCGTCCGACCTGACGATCGTGGGCGGCAAGGTCGTGT ACGGCGCCGGCGACTTCAAGGCGCTGGACGACACCCCGCTGCCGCCCGCCATGCCCGACTGGTCGCCGGTGCGTACCTTC AAGGGCTATGCCGCCTGGGGCGAGCCGGAAGGCGCGGGCAAGAACTCGCTGCGCATGGCGGCCGCCTGCGGCTGTGCCAA TTCCTGCGGCGTGCACGGCCACCAGCATGCCAATGCCTGGTCGAGCCGGCTGCCGGTTTCGGACCTGCGCAGCTTCTGGG GCGCCCTCGGCTGCGCCTGCTGGGCGGTGTGA
Upstream 100 bases:
>100_bases CTTCCATCCAGCGCCTCATCGCGCTCCCGCCCGGCCCCGCCGCCTCCAGCTTTCGCACGTCGCCCGCCCCCAATGGGGCG GCAGCAACGGAGAGACCCGC
Downstream 100 bases:
>100_bases GGTGGCGCCCCGCGCCACATCGGCTTGGACGGCGGGCCTTCACCGGCTCGCCCTCCTCGCTCTTTGCGCCGCCTATATCC AGGGGCCGGTGACGAAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MTADLILHNGKITTLDRTNPVASAVAIKDGTFLAVGTDAEAMAHAGPTTRKVDLKGRSVLPGLIDNHLHIIRGGLNFNME LRWDGMRSLADAMDMLKRQVAVTPPPQWVRVVGGFTEHQFAEKRLPTIAELNAVAPETPVFILHLYDRALLNAAALRAVG YTKDTPEPPGGEITRDAAGNPTGLLLARPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGAIDAGGGFQNYPD DYAVIQKLADDNQLTIRLAYNLFTQKPKQEKEDFLNWTKTSKYKQGSDYFRHNGAGEMLVFSAADFEDFREPRPDMPPEM EGDLEGVVRILAENRWPWRLHATYDETISRALDVFETVNKDVPLAGLNWFFDHAETISERSIDRIAALGGGIAVQHRMAY QGEYFVERYGAAAAEATPPVARMLDKGVKVSAGTDATRVASYNPWVSLSWLVTGQTVGGLRLYPRHNCLDRETALRMWTE KVTWFSNEEGRKGQIVAGQFADLIVPDRDFFSCPEADIAHMSSDLTIVGGKVVYGAGDFKALDDTPLPPAMPDWSPVRTF KGYAAWGEPEGAGKNSLRMAAACGCANSCGVHGHQHANAWSSRLPVSDLRSFWGALGCACWAV
Sequences:
>Translated_623_residues MTADLILHNGKITTLDRTNPVASAVAIKDGTFLAVGTDAEAMAHAGPTTRKVDLKGRSVLPGLIDNHLHIIRGGLNFNME LRWDGMRSLADAMDMLKRQVAVTPPPQWVRVVGGFTEHQFAEKRLPTIAELNAVAPETPVFILHLYDRALLNAAALRAVG YTKDTPEPPGGEITRDAAGNPTGLLLARPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGAIDAGGGFQNYPD DYAVIQKLADDNQLTIRLAYNLFTQKPKQEKEDFLNWTKTSKYKQGSDYFRHNGAGEMLVFSAADFEDFREPRPDMPPEM EGDLEGVVRILAENRWPWRLHATYDETISRALDVFETVNKDVPLAGLNWFFDHAETISERSIDRIAALGGGIAVQHRMAY QGEYFVERYGAAAAEATPPVARMLDKGVKVSAGTDATRVASYNPWVSLSWLVTGQTVGGLRLYPRHNCLDRETALRMWTE KVTWFSNEEGRKGQIVAGQFADLIVPDRDFFSCPEADIAHMSSDLTIVGGKVVYGAGDFKALDDTPLPPAMPDWSPVRTF KGYAAWGEPEGAGKNSLRMAAACGCANSCGVHGHQHANAWSSRLPVSDLRSFWGALGCACWAV >Mature_622_residues TADLILHNGKITTLDRTNPVASAVAIKDGTFLAVGTDAEAMAHAGPTTRKVDLKGRSVLPGLIDNHLHIIRGGLNFNMEL RWDGMRSLADAMDMLKRQVAVTPPPQWVRVVGGFTEHQFAEKRLPTIAELNAVAPETPVFILHLYDRALLNAAALRAVGY TKDTPEPPGGEITRDAAGNPTGLLLARPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGAIDAGGGFQNYPDD YAVIQKLADDNQLTIRLAYNLFTQKPKQEKEDFLNWTKTSKYKQGSDYFRHNGAGEMLVFSAADFEDFREPRPDMPPEME GDLEGVVRILAENRWPWRLHATYDETISRALDVFETVNKDVPLAGLNWFFDHAETISERSIDRIAALGGGIAVQHRMAYQ GEYFVERYGAAAAEATPPVARMLDKGVKVSAGTDATRVASYNPWVSLSWLVTGQTVGGLRLYPRHNCLDRETALRMWTEK VTWFSNEEGRKGQIVAGQFADLIVPDRDFFSCPEADIAHMSSDLTIVGGKVVYGAGDFKALDDTPLPPAMPDWSPVRTFK GYAAWGEPEGAGKNSLRMAAACGCANSCGVHGHQHANAWSSRLPVSDLRSFWGALGCACWAV
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 68458; Mature: 68327
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADLILHNGKITTLDRTNPVASAVAIKDGTFLAVGTDAEAMAHAGPTTRKVDLKGRSVL CCCEEEEECCEEEEECCCCCCCEEEEEECCCEEEECCCHHHHHCCCCCCEEEECCCCCCC PGLIDNHLHIIRGGLNFNMELRWDGMRSLADAMDMLKRQVAVTPPPQWVRVVGGFTEHQF CHHHCCCEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHH AEKRLPTIAELNAVAPETPVFILHLYDRALLNAAALRAVGYTKDTPEPPGGEITRDAAGN HHHHCCCHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCC PTGLLLARPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGAIDAGGGFQNYPD CCEEEEECCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCH DYAVIQKLADDNQLTIRLAYNLFTQKPKQEKEDFLNWTKTSKYKQGSDYFRHNGAGEMLV HHHHHHHHCCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEE FSAADFEDFREPRPDMPPEMEGDLEGVVRILAENRWPWRLHATYDETISRALDVFETVNK EECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCC DVPLAGLNWFFDHAETISERSIDRIAALGGGIAVQHRMAYQGEYFVERYGAAAAEATPPV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCHHHHHHHCCCCCCCCCHH ARMLDKGVKVSAGTDATRVASYNPWVSLSWLVTGQTVGGLRLYPRHNCLDRETALRMWTE HHHHHCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHH KVTWFSNEEGRKGQIVAGQFADLIVPDRDFFSCPEADIAHMSSDLTIVGGKVVYGAGDFK HHEEECCCCCCCCCEEECCHHHEECCCCCCCCCCCHHHHHCCCCEEEECCEEEECCCCCC ALDDTPLPPAMPDWSPVRTFKGYAAWGEPEGAGKNSLRMAAACGCANSCGVHGHQHANAW CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHH SSRLPVSDLRSFWGALGCACWAV HHCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TADLILHNGKITTLDRTNPVASAVAIKDGTFLAVGTDAEAMAHAGPTTRKVDLKGRSVL CCEEEEECCEEEEECCCCCCCEEEEEECCCEEEECCCHHHHHCCCCCCEEEECCCCCCC PGLIDNHLHIIRGGLNFNMELRWDGMRSLADAMDMLKRQVAVTPPPQWVRVVGGFTEHQF CHHHCCCEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHH AEKRLPTIAELNAVAPETPVFILHLYDRALLNAAALRAVGYTKDTPEPPGGEITRDAAGN HHHHCCCHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCC PTGLLLARPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGAIDAGGGFQNYPD CCEEEEECCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCH DYAVIQKLADDNQLTIRLAYNLFTQKPKQEKEDFLNWTKTSKYKQGSDYFRHNGAGEMLV HHHHHHHHCCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEE FSAADFEDFREPRPDMPPEMEGDLEGVVRILAENRWPWRLHATYDETISRALDVFETVNK EECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCC DVPLAGLNWFFDHAETISERSIDRIAALGGGIAVQHRMAYQGEYFVERYGAAAAEATPPV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCHHHHHHHCCCCCCCCCHH ARMLDKGVKVSAGTDATRVASYNPWVSLSWLVTGQTVGGLRLYPRHNCLDRETALRMWTE HHHHHCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHH KVTWFSNEEGRKGQIVAGQFADLIVPDRDFFSCPEADIAHMSSDLTIVGGKVVYGAGDFK HHEEECCCCCCCCCEEECCHHHEECCCCCCCCCCCHHHHHCCCCEEEECCEEEECCCCCC ALDDTPLPPAMPDWSPVRTFKGYAAWGEPEGAGKNSLRMAAACGCANSCGVHGHQHANAW CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHH SSRLPVSDLRSFWGALGCACWAV HHCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA