Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 158424341

GI number: 158424341

Start: 3085130

End: 3086662

Strand: Direct

Name: cph2 [H]

Synonym: AZC_2717

Alternate gene names: 158424341

Gene position: 3085130-3086662 (Clockwise)

Preceding gene: 158424340

Following gene: 158424342

Centisome position: 57.45

GC content: 67.32

Gene sequence:

>1533_bases
GTGACCCAGACACCGCCTTCCCAACCGGACCAACTGCCGAAGGACGCAGTTCCTCCTTCGGCGACCCGCTGGATCATTCC
CGGTGGGCTGCTGATCGTTCTGCTGGTCGCCGTCCTCACGACGGTGAGCCTCTGGGAGGCCCGGCAAAATGCGCTCGGAA
ACGAGCAACGCCAGATCGGCGACCTCGTCCTGATCACCAGCCAGGACATTCAGCGCCATTATGAACTGTATGACCTCCTG
CTCCGGGAGGCGGCCGCCCAGATCGTGGATCTGCCACCGTCCCGCGGCACAGGTGCGCCCGCCAACATCATCCGGCGGAC
CATGGACGCGAGCCGCATCCCGGCGGAGATGATCCTCATCTCGGAATCCGGAAAGCTGGTCGCCAGTTCCCGGCATCCCA
CCAATGGCGAGCAGGCGGCCGACCGCGACTATTTCATCATCCAGCGCGACCAGCCGGCGACCGGGCTTTACCTCAGTCGC
CCCTTCCGGAACCGGCTTGATCAGGAGCCCTGCGTGGCGCTGTCCCGCCGCCTCACGGACAGCCATGGCAATTTCGCCGG
CGTTCTCGCCATCCTCGTGCCCCTTCAGAGCGTGCGCGAGATGTTCGCCAGCCTCACCCGCCACCGGAGCGACGCGATCA
GCCTGATCCGGCTCGATGGCACCATCCTCGTCCGCCAGCCCGATCTCGGCTCGTTCGGCGGGTTCGGGCTCAACGTCTTC
GGCCGACCGAACTTCCAGCGCATGACGACGACGCCGCAGGGCAGCTTCACCAGCACCTCCGAAATCGACCGGGTCAAGCG
TTACTACGTTTTCTCACGCGTGGGCGACCTGCCGCTGATCGTGGTGGTCGGTGTCGGCATGGACGCCGTCACCGCCCCCT
GGCAGGCCCAATGGCTCGCCGGGGCGGCGACGTCGGTGGTCCTCTGCCTTCTGATCCTCGGCGCGGCCGTGGCCCTCCGC
CGGGAAATGCTGCGGCGCTTTGAAATCGAGCAGGAATTTCTCCGCCTGTCCCAGACCGACAGTCTGACCGGCCTGCCCAA
CAGGCGGCATTTCGACGAGTTCGGCCAGCGGGAATGGCAGCGGGCCGCCCGACAGCGCAGTTCCATCGCCGTCCTCATGG
TGGACATCGACCATTTCAAACAGGTCAACGACCGTATCGGTCACCCAGGCGGCGACCGGGTGCTGCGGGAGGTCTCCGAC
ATCATCCGCGCCAGCCTCCATCGGCCGGGCGACTTCGCGGGGCGCTACGGCGGGGAGGAGTTCGCCATCATCCTGCCGGA
GACGGACGCCCCCGCTGCAGCGCATGTGGCCGAGCGCATTCGCGCCGCCATCGAGGCGAATACCGCCGAGGGTGTCGCGC
CCGTCACCGTCAGCATTGGCCTTGCCGCGGGCCTCGCAGCGCCCAAGGGCACGCTCGCGGAGATGATGATCGCGGCCGAT
CACGCGCTCTACCGCGCCAAGGAGACGGGCCGGAACCGGGTCGTGAGCAGCCACGTCGCCCGCAACGACAATCTGCGCCC
GCTCGCCTGCTGA

Upstream 100 bases:

>100_bases
AGCTTCGCGCCAGAACGGATGCGCTTGTCCTTGCGGCATATAGCTCGCAATTTTAAACGGAGGTCAGTGCTTACCCCCAA
GGGCATGACTCCGCCGCGCC

Downstream 100 bases:

>100_bases
GCCGGCGCAGAAAAGCCGCGTGCTCGACCGCCACGCCTTCCGCTTCCGAGCCGCCGAGTTTTTTTAACCGACCCATTGCG
ATGCAGCACGATATCTGTGG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MTQTPPSQPDQLPKDAVPPSATRWIIPGGLLIVLLVAVLTTVSLWEARQNALGNEQRQIGDLVLITSQDIQRHYELYDLL
LREAAAQIVDLPPSRGTGAPANIIRRTMDASRIPAEMILISESGKLVASSRHPTNGEQAADRDYFIIQRDQPATGLYLSR
PFRNRLDQEPCVALSRRLTDSHGNFAGVLAILVPLQSVREMFASLTRHRSDAISLIRLDGTILVRQPDLGSFGGFGLNVF
GRPNFQRMTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLAGAATSVVLCLLILGAAVALR
REMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSD
IIRASLHRPGDFAGRYGGEEFAIILPETDAPAAAHVAERIRAAIEANTAEGVAPVTVSIGLAAGLAAPKGTLAEMMIAAD
HALYRAKETGRNRVVSSHVARNDNLRPLAC

Sequences:

>Translated_510_residues
MTQTPPSQPDQLPKDAVPPSATRWIIPGGLLIVLLVAVLTTVSLWEARQNALGNEQRQIGDLVLITSQDIQRHYELYDLL
LREAAAQIVDLPPSRGTGAPANIIRRTMDASRIPAEMILISESGKLVASSRHPTNGEQAADRDYFIIQRDQPATGLYLSR
PFRNRLDQEPCVALSRRLTDSHGNFAGVLAILVPLQSVREMFASLTRHRSDAISLIRLDGTILVRQPDLGSFGGFGLNVF
GRPNFQRMTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLAGAATSVVLCLLILGAAVALR
REMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSD
IIRASLHRPGDFAGRYGGEEFAIILPETDAPAAAHVAERIRAAIEANTAEGVAPVTVSIGLAAGLAAPKGTLAEMMIAAD
HALYRAKETGRNRVVSSHVARNDNLRPLAC
>Mature_509_residues
TQTPPSQPDQLPKDAVPPSATRWIIPGGLLIVLLVAVLTTVSLWEARQNALGNEQRQIGDLVLITSQDIQRHYELYDLLL
REAAAQIVDLPPSRGTGAPANIIRRTMDASRIPAEMILISESGKLVASSRHPTNGEQAADRDYFIIQRDQPATGLYLSRP
FRNRLDQEPCVALSRRLTDSHGNFAGVLAILVPLQSVREMFASLTRHRSDAISLIRLDGTILVRQPDLGSFGGFGLNVFG
RPNFQRMTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLAGAATSVVLCLLILGAAVALRR
EMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSDI
IRASLHRPGDFAGRYGGEEFAIILPETDAPAAAHVAERIRAAIEANTAEGVAPVTVSIGLAAGLAAPKGTLAEMMIAADH
ALYRAKETGRNRVVSSHVARNDNLRPLAC

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=42.8571428571429, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=34.3589743589744, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.7906976744186, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=38.2165605095541, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=33.9622641509434, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=33.5294117647059, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081974, Length=228, Percent_Identity=30.7017543859649, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787802, Length=199, Percent_Identity=30.1507537688442, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=37.037037037037, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=33.1460674157303, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=36.1963190184049, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=32.1428571428571, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55996; Mature: 55865

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTPPSQPDQLPKDAVPPSATRWIIPGGLLIVLLVAVLTTVSLWEARQNALGNEQRQIG
CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
DLVLITSQDIQRHYELYDLLLREAAAQIVDLPPSRGTGAPANIIRRTMDASRIPAEMILI
CEEEEECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEE
SESGKLVASSRHPTNGEQAADRDYFIIQRDQPATGLYLSRPFRNRLDQEPCVALSRRLTD
ECCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEECCHHHHHCCCCHHHHHHHHHHC
SHGNFAGVLAILVPLQSVREMFASLTRHRSDAISLIRLDGTILVRQPDLGSFGGFGLNVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCCCCCCCCCEEEC
GRPNFQRMTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLA
CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHH
GAATSVVLCLLILGAAVALRREMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSDIIRASLHRPGDFAGRYGGEE
HHHHHCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCE
FAIILPETDAPAAAHVAERIRAAIEANTAEGVAPVTVSIGLAAGLAAPKGTLAEMMIAAD
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHH
HALYRAKETGRNRVVSSHVARNDNLRPLAC
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TQTPPSQPDQLPKDAVPPSATRWIIPGGLLIVLLVAVLTTVSLWEARQNALGNEQRQIG
CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
DLVLITSQDIQRHYELYDLLLREAAAQIVDLPPSRGTGAPANIIRRTMDASRIPAEMILI
CEEEEECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEE
SESGKLVASSRHPTNGEQAADRDYFIIQRDQPATGLYLSRPFRNRLDQEPCVALSRRLTD
ECCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEECCHHHHHCCCCHHHHHHHHHHC
SHGNFAGVLAILVPLQSVREMFASLTRHRSDAISLIRLDGTILVRQPDLGSFGGFGLNVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCCCCCCCCCEEEC
GRPNFQRMTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLA
CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHH
GAATSVVLCLLILGAAVALRREMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSDIIRASLHRPGDFAGRYGGEE
HHHHHCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCE
FAIILPETDAPAAAHVAERIRAAIEANTAEGVAPVTVSIGLAAGLAAPKGTLAEMMIAAD
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHH
HALYRAKETGRNRVVSSHVARNDNLRPLAC
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]