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The map label for this gene is yecS [H]

Identifier: 158424304

GI number: 158424304

Start: 3038200

End: 3038895

Strand: Reverse

Name: yecS [H]

Synonym: AZC_2680

Alternate gene names: 158424304

Gene position: 3038895-3038200 (Counterclockwise)

Preceding gene: 158424305

Following gene: 158424303

Centisome position: 56.59

GC content: 63.79

Gene sequence:

>696_bases
ATGTGGAGCCAGATCGTCGAGGAGTGGCCGCGCTTCGCCACCTATTACAACCTCATCTTCATCGCCAAGGCGGCAGGGAC
CACGCTCGCACTGTCTGCGCTGGGCTGCATCCTCGGCAGCCTCATCGGCCTTGGGCTCGCGGTGACGCGGGTGACGCGGG
CGCGATGGCTGCTGCCGCTGCGCCTCGTTGCGCTGGTGTTCACAGAGGTGTTCCGCCGCGTGCCGTTCCTCGTCACGCTC
ATGCTCTGCTTCTTCGCCTTCCAGGCGACGGGCTATGACATTCCGCTGTTCGTGGTGGCGGCGGTGTCCGTGACGATGAT
CGCCGGCGCCTTTCTCGGCGAGATCATCCGCGGCGGCTTCAATTCCGTGCACCGGAACCAGTGGGAAGCGGCTGAAACGA
TGAATTTCTCGCTCATCGACACCATCCGCCTCGTGGTGCTGCCGCAGGCGTGGCGCATCGTGCTGCCGCCGGCCTTCGGC
TTCTTCGTCATGTTCATCAAGGACACGGCACTGGCCTCGCAGATCGGCGTCATCGAGCTGACCTATGTGGGCAAGGTCCT
GAACAACAAGGGCTTCTCCGCCGCGCTCAGCTTCGGCGTGATCCTCATCGTCTACTTCCTCATTTCCTACCCGCTGTCGC
GCCTCGGCGCGCATCTGGAGGCGCGTCTTGCATCATCTCGACATCGCCGGGCTTGA

Upstream 100 bases:

>100_bases
CCGTCACGGCCGGCATCTATGTGGTGCTGACGCTGGCCGCCTCGCTGCTGCTCGCCTTTGCAGGCCGCACCTTCTTCCGC
GCCCGCACGGAGCTGATCTG

Downstream 100 bases:

>100_bases
GGCCCGCTACGGCGAACACACCGTCCTTTCCGGCATCGACATGACCGTCGGCCGGGCGGATGTCATCGGCCTCATTGGCC
CGTCCGGCTCGGGCAAGAGC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MWSQIVEEWPRFATYYNLIFIAKAAGTTLALSALGCILGSLIGLGLAVTRVTRARWLLPLRLVALVFTEVFRRVPFLVTL
MLCFFAFQATGYDIPLFVVAAVSVTMIAGAFLGEIIRGGFNSVHRNQWEAAETMNFSLIDTIRLVVLPQAWRIVLPPAFG
FFVMFIKDTALASQIGVIELTYVGKVLNNKGFSAALSFGVILIVYFLISYPLSRLGAHLEARLASSRHRRA

Sequences:

>Translated_231_residues
MWSQIVEEWPRFATYYNLIFIAKAAGTTLALSALGCILGSLIGLGLAVTRVTRARWLLPLRLVALVFTEVFRRVPFLVTL
MLCFFAFQATGYDIPLFVVAAVSVTMIAGAFLGEIIRGGFNSVHRNQWEAAETMNFSLIDTIRLVVLPQAWRIVLPPAFG
FFVMFIKDTALASQIGVIELTYVGKVLNNKGFSAALSFGVILIVYFLISYPLSRLGAHLEARLASSRHRRA
>Mature_231_residues
MWSQIVEEWPRFATYYNLIFIAKAAGTTLALSALGCILGSLIGLGLAVTRVTRARWLLPLRLVALVFTEVFRRVPFLVTL
MLCFFAFQATGYDIPLFVVAAVSVTMIAGAFLGEIIRGGFNSVHRNQWEAAETMNFSLIDTIRLVVLPQAWRIVLPPAFG
FFVMFIKDTALASQIGVIELTYVGKVLNNKGFSAALSFGVILIVYFLISYPLSRLGAHLEARLASSRHRRA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=214, Percent_Identity=29.4392523364486, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787030, Length=224, Percent_Identity=35.2678571428571, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=28.8461538461538, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994930, Length=142, Percent_Identity=30.9859154929577, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786874, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786873, Length=237, Percent_Identity=27.4261603375527, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25608; Mature: 25608

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSQIVEEWPRFATYYNLIFIAKAAGTTLALSALGCILGSLIGLGLAVTRVTRARWLLPL
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVALVFTEVFRRVPFLVTLMLCFFAFQATGYDIPLFVVAAVSVTMIAGAFLGEIIRGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSVHRNQWEAAETMNFSLIDTIRLVVLPQAWRIVLPPAFGFFVMFIKDTALASQIGVIEL
HHHHHCHHHHHHHCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHH
TYVGKVLNNKGFSAALSFGVILIVYFLISYPLSRLGAHLEARLASSRHRRA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWSQIVEEWPRFATYYNLIFIAKAAGTTLALSALGCILGSLIGLGLAVTRVTRARWLLPL
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVALVFTEVFRRVPFLVTLMLCFFAFQATGYDIPLFVVAAVSVTMIAGAFLGEIIRGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSVHRNQWEAAETMNFSLIDTIRLVVLPQAWRIVLPPAFGFFVMFIKDTALASQIGVIEL
HHHHHCHHHHHHHCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHH
TYVGKVLNNKGFSAALSFGVILIVYFLISYPLSRLGAHLEARLASSRHRRA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]