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The map label for this gene is soxC [H]

Identifier: 158424282

GI number: 158424282

Start: 3011354

End: 3012574

Strand: Direct

Name: soxC [H]

Synonym: AZC_2658

Alternate gene names: 158424282

Gene position: 3011354-3012574 (Clockwise)

Preceding gene: 158424280

Following gene: 158424283

Centisome position: 56.08

GC content: 66.67

Gene sequence:

>1221_bases
GTGATCGCCAGGGCCAAGGAAGCGTTCGCCATGCCTCACCCTCTGTTCGCCCTCGATGCCGCAAACCCTCACCTCGCCAA
GGCCATCGCGCTGCGCGAGATCTTCGCGCGCGATGCGGTGGAGCGCGATCAGGAGGGCGGGCGGCCGGAGGCGCAGATTC
GCCTGCTGAAGGAGAGCGGCCTGCTGAACGCGCTGATTCCGAAGGAATATGGCGGCGCCGGCGAGCCCTGGTCCACGGCG
CTGAAGATCGCCCGGGAATTCGCCAAGGTGGATGGCTCGCTGGGCCACATCTATGCCTACCACTTCAACTCCGTGCACGC
CGCCTATGTGCGCGGCACGCCGGAGCAGGCGGCCGATTTCTATCGCCGCTCGGCCGCAGGCAACTGGTTCTGGGGCAATA
CGGCCAACAGCTTCTCCCGCAGCCTGTTCGGGCGGCGGGATGGGGCGGACTGGATCCTCGACGGCTATCGTCCCTTCACC
TCCGGCTCCCATGTGGCCGATTACATTCAGGTGGCCTTCGAGGACGAGGCCACCAACGAACGGCACTTCGCCGCCATCCC
CTCAAACAGGGAGGGGCTGACCATCGAGAATGACTGGAACGGCATCGGCCAGCGCCAGACCGGCAGCGGGCGCGTCACTT
ATACGAACGTGCGCATCCGGTCGGACGAGATCTTCGATTTTCGCGCCAATGAGGCCAAGCCCTTCCAAACGCTGACGCCC
TTCCAGCAGCAGAGCGTGCTGCTCAACGTCTTCGTCGGCAGCGCGCAGGGCGCCCTCATCGCGGCGCGCGACTATACGCG
CGAGAGTTCCCGCCCCTGGCTGCATTCCGGCGTCGAGCGCCACATCGACGATCCGTGGGTGAAGCGGGTCTATGGGGATC
TCTACATCAAGACCAAGGCGGCGACCGCCCTCGCCGATGAAGCCGCCGAGGCGCTCGATGCGGTGTGGGCGCGCGGCCGC
GATCTGACAGAGGAAGAGCGCGGCGCCGCCGCCGTGAAGATCGCCGCCGCCAACGTCTATGCCGGCAATGTGGCGCTGGA
AGTCACGAGCCAGATCTTCGAGGTGATGGGCGCGCGCTCAGCCACCACCGCTCACGGGTTCGACCGCTTCTGGCGCAACG
TGCGCACCCACACGCTGCACAACCCCGCCGAATACAAGACCCGCAACGTGGGCGCCTGGGTGCTCACCGGCGAACCGCCG
GCCCCCAGCACGTTCCAATAG

Upstream 100 bases:

>100_bases
CGTACATGCGAGGTTCAGGCGAGCCAGCACATTAATTCGATAAATTTGATTGATTAAATCTTAGAGACTGGCAAACTCCC
TCTCCCGCGCCGATCCGCTC

Downstream 100 bases:

>100_bases
GCCGCAGTTTCGGCCCCGCTCCGCTCTCCCCCAGCCTTATCCGAGGACATTCACCGCCATGTCGGGTCCCTTTGTCGACC
GCCGTTCTTTCTCCCTCGGC

Product: acyl-CoA dehydrogenase

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MIARAKEAFAMPHPLFALDAANPHLAKAIALREIFARDAVERDQEGGRPEAQIRLLKESGLLNALIPKEYGGAGEPWSTA
LKIAREFAKVDGSLGHIYAYHFNSVHAAYVRGTPEQAADFYRRSAAGNWFWGNTANSFSRSLFGRRDGADWILDGYRPFT
SGSHVADYIQVAFEDEATNERHFAAIPSNREGLTIENDWNGIGQRQTGSGRVTYTNVRIRSDEIFDFRANEAKPFQTLTP
FQQQSVLLNVFVGSAQGALIAARDYTRESSRPWLHSGVERHIDDPWVKRVYGDLYIKTKAATALADEAAEALDAVWARGR
DLTEEERGAAAVKIAAANVYAGNVALEVTSQIFEVMGARSATTAHGFDRFWRNVRTHTLHNPAEYKTRNVGAWVLTGEPP
APSTFQ

Sequences:

>Translated_406_residues
MIARAKEAFAMPHPLFALDAANPHLAKAIALREIFARDAVERDQEGGRPEAQIRLLKESGLLNALIPKEYGGAGEPWSTA
LKIAREFAKVDGSLGHIYAYHFNSVHAAYVRGTPEQAADFYRRSAAGNWFWGNTANSFSRSLFGRRDGADWILDGYRPFT
SGSHVADYIQVAFEDEATNERHFAAIPSNREGLTIENDWNGIGQRQTGSGRVTYTNVRIRSDEIFDFRANEAKPFQTLTP
FQQQSVLLNVFVGSAQGALIAARDYTRESSRPWLHSGVERHIDDPWVKRVYGDLYIKTKAATALADEAAEALDAVWARGR
DLTEEERGAAAVKIAAANVYAGNVALEVTSQIFEVMGARSATTAHGFDRFWRNVRTHTLHNPAEYKTRNVGAWVLTGEPP
APSTFQ
>Mature_406_residues
MIARAKEAFAMPHPLFALDAANPHLAKAIALREIFARDAVERDQEGGRPEAQIRLLKESGLLNALIPKEYGGAGEPWSTA
LKIAREFAKVDGSLGHIYAYHFNSVHAAYVRGTPEQAADFYRRSAAGNWFWGNTANSFSRSLFGRRDGADWILDGYRPFT
SGSHVADYIQVAFEDEATNERHFAAIPSNREGLTIENDWNGIGQRQTGSGRVTYTNVRIRSDEIFDFRANEAKPFQTLTP
FQQQSVLLNVFVGSAQGALIAARDYTRESSRPWLHSGVERHIDDPWVKRVYGDLYIKTKAATALADEAAEALDAVWARGR
DLTEEERGAAAVKIAAANVYAGNVALEVTSQIFEVMGARSATTAHGFDRFWRNVRTHTLHNPAEYKTRNVGAWVLTGEPP
APSTFQ

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508101, Length=336, Percent_Identity=22.6190476190476, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 45014; Mature: 45014

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARAKEAFAMPHPLFALDAANPHLAKAIALREIFARDAVERDQEGGRPEAQIRLLKESG
CCCCCCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHHCC
LLNALIPKEYGGAGEPWSTALKIAREFAKVDGSLGHIYAYHFNSVHAAYVRGTPEQAADF
CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCHHHHHHH
YRRSAAGNWFWGNTANSFSRSLFGRRDGADWILDGYRPFTSGSHVADYIQVAFEDEATNE
HHHHCCCCCEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHEEECCCCCCC
RHFAAIPSNREGLTIENDWNGIGQRQTGSGRVTYTNVRIRSDEIFDFRANEAKPFQTLTP
CEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCEEEECCCCCCCCHHCCC
FQQQSVLLNVFVGSAQGALIAARDYTRESSRPWLHSGVERHIDDPWVKRVYGDLYIKTKA
HHHHHEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCEEEEEHH
ATALADEAAEALDAVWARGRDLTEEERGAAAVKIAAANVYAGNVALEVTSQIFEVMGARS
HHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCC
ATTAHGFDRFWRNVRTHTLHNPAEYKTRNVGAWVLTGEPPAPSTFQ
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MIARAKEAFAMPHPLFALDAANPHLAKAIALREIFARDAVERDQEGGRPEAQIRLLKESG
CCCCCCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHHCC
LLNALIPKEYGGAGEPWSTALKIAREFAKVDGSLGHIYAYHFNSVHAAYVRGTPEQAADF
CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCHHHHHHH
YRRSAAGNWFWGNTANSFSRSLFGRRDGADWILDGYRPFTSGSHVADYIQVAFEDEATNE
HHHHCCCCCEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHEEECCCCCCC
RHFAAIPSNREGLTIENDWNGIGQRQTGSGRVTYTNVRIRSDEIFDFRANEAKPFQTLTP
CEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCEEEECCCCCCCCHHCCC
FQQQSVLLNVFVGSAQGALIAARDYTRESSRPWLHSGVERHIDDPWVKRVYGDLYIKTKA
HHHHHEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCEEEEEHH
ATALADEAAEALDAVWARGRDLTEEERGAAAVKIAAANVYAGNVALEVTSQIFEVMGARS
HHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCC
ATTAHGFDRFWRNVRTHTLHNPAEYKTRNVGAWVLTGEPPAPSTFQ
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]