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The map label for this gene is clpV1 [H]

Identifier: 158424211

GI number: 158424211

Start: 2912996

End: 2915635

Strand: Direct

Name: clpV1 [H]

Synonym: AZC_2587

Alternate gene names: 158424211

Gene position: 2912996-2915635 (Clockwise)

Preceding gene: 158424209

Following gene: 158424212

Centisome position: 54.25

GC content: 67.39

Gene sequence:

>2640_bases
GTGGAGACAAGAATGGCTGCGGTTGACCTCAAGGCTCTGATCGGCCGCTTGGATGGCACCTGCCGCTCGACCTTGGAGGG
GGCAGCCGGCTTCGCCCTCATGCGCACCCACTACAATGTGGAGATGGAGCACTGGCTCTCGCGCCTGCTGGCGGAAGCCA
ATACGGACATCCCGCTCATTCTCGCTCATTACGGTGTCGAGCTCGGCGCCGTGGAACGGGACATCGCCCGCAGCCTCGAC
CGGCTGAAGACCGGCAACAGCCGCCCGCCGGGCCTCTCGCCGGACATCGTGGAGACGGCCAAGCAGGCCTGGCTGCTGGC
TTCCATCGAAGGCGGCCTGTCCCAGGCGCGGTCCGGCCACCTGCTCTGGGCCATGCTCTCGGACAGCTCGCTGGCGCTGA
AGCTCAACGACATGTCGGCGGGCTTCAAGACGCTCTCCGCCGACGCGCTGCAAAAGGACTTCGCCAGCATCACCGCCGGC
TCAAGCGAGCAGCAGGCGGCCCTCGCGCAGCCCGCCCCCGGCTTCGCGGCTCCCGGAACCGGCGGCAAGGCGGGCGATGC
GCTGGCGCAGTACACGGTGGACCTGACCGCCGAAGCCAAGGCGGGTCGGATCGACCCGATCATCGGGCGCGATTCAGAGA
TCCGCCAGATCGTCGACATCCTCATCCGCCGCCGGCAGAACAATCCGATCCTCACGGGCGAGGCGGGCGTCGGCAAGACG
GCGGTCGTGGAAGGCTTTGCGCTGCGCATCGCCGCCGGCGACGTGCCTCCGGCCCTGCGCAACGTTGTCCTGCGCACCCT
CGACCTCGGCCTGCTCCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAGAGCCGGCTCCGGGCGGTGATCGACGGCGTGA
AGGCCTCGCCCGTTCCGATCATCCTCTTCATCGACGAGGCGCACACCCTGATCGGCGCCGGCGGTGCGGCGGGACAAGGC
GATGCCGCCAACCTGCTGAAGCCGGCCCTCGCCCGTGGCGAACTGCGGACCATCGCGGCCACCACGTGGGCCGAATACAA
GAAATATTTCGAGAAGGACGCCGCCCTCACCCGCCGCTTCCAGGTGGTGAAGGTGGAAGAACCCTCCGAGCCCATCGCCA
TTGCCATGCTGCGCGGCCTCGTGCCCACGCTGGAGGGCTATCACAAGGTCCGCATCCTCGATGAGGCGCTGAGCGAGGCC
GTGCGCCTGTCCGCCCGCTTCATTCCTTCGCGCCAGCTGCCGGACAAGGGCGTCTCGCTGCTCGACACCGCCTGCTCACG
GGTCGCCGTAAGCCAGACTACCATTCCCGCCGCCATCGACGACCGCAACCGGCGGATCGAGCTGATCGACGCCGAGATGG
TGCTCATCACCCGCGAGCAGGCCTCCGGCGTCGATCACACCAAGCGTGCGGAGACGCTGGCCGCCGAGCGGGCCACCCTC
GATGCCGAGCGCATTACGCTCACCGAGCGCTGGGAAGCGGAGCTGGCGCTCGTGAAGTCTCTGGGCGACCTGCGCACGCA
GCTGGAAGCCGAGGCGGAGGCCACCGCGCATGACGCGCTGCGGGTGAAATATGCCGAGGAGAGCGCCAAGCTCGCCGAAT
TGCAGGGCGAGGCGCCGCTGGTCTTCCCACTGGTCGATGGCCAGGCCATCGCGGAAGTGGTGGAGAACTGGACCGGCATT
CCAGCCGGCCGGATGCGCAGCGACGAGATCCGCAACGTCCTCGGCTTGCAGGCGACCATGGAACAGCGGGTGGTCGGCCA
GTCCCACGCCATCGCGGCGGTGGCGCAGGCCATCCGCACGTCGCGGGCCGGCATGACAGACCCTCGCAAGCCGCTGGGCG
TCTTCCTGATGGTCGGCCCCTCGGGCGTCGGCAAGACGGAGACCGCGCTGACGCTGGCGGACCAGCTCTATGGCGGTGAG
CAGAACCTCACCACCATCAACATGTCTGAATATAAGGAAGAGCATAAGGTCAGCCTGCTCATGGGCAGCCCGCCCGGCTA
TGTCGGCTATGGCGAGGGCGGCGTGCTCACCGAGGCGGTGCGCCGGCGGCCCTATTCGGTCATTCTCCTCGACGAGATGG
AGAAGGCCCATCCGGGCGTGCAGGACATCTTCTTCCAAGTGTTCGACAAGGGGTCGATGAAGGACGGCGAAGGCCGGGAG
ATCGACTTCAAGAACACCGTCATCATCATGACGTCCAACGCCGCATCGGACCTCATCACCAAGCTCTGCGCCGATCCCGA
GACCATGCCCGAGCCGGGCGTGCTGGCGCAGGCGCTGCGGCCGGAGCTCGAGAAATACTACAAGGCCGCCTTCCTCGGCC
GCGTGACGCTGGTGCCCTATCTGCCGCTGACGGATGCCATCATCCGCCAGATCGTGGTGCTCCAGCTCGGCCGCATCCGC
AACCGGGTGATGGAAGCCTATGGCGCGAGCTTCACCTACGCGCCGGAGCTGGTGGAAACCATCGCGGCGCGCTGCACCGA
AAGCGCCTCGGGCGCGCGCAACATCGAGAACATCCTGTCGCGGACGCTGCTGCCCGAACTCTCCGGCCACCTACTGGAAG
CCATGGCGCAGGCGAAGCCCATCACCGCGATCAGTGTCGGGCTGAAGGAGGACGGCCAGTTCTCCTATCAGTTGCAGTGA

Upstream 100 bases:

>100_bases
CCCAAATATCGCCACCCCCAGTGGCCGAGACGACACACTCTCGTGACCTTTATACCGCTAGTCTGACGCGGATTCCTGAT
TTACTCCTTGCACGGCTAGG

Downstream 100 bases:

>100_bases
GCGGGGCGCCGCGCCATGCCCCCCGCAGCCCGCCTCGGCGACAAGGTGATGCAAGCCGGCCCGCACTGCCACGCGCCGAT
GCATCCGGCCGCGCCTGTGC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 879; Mature: 879

Protein sequence:

>879_residues
METRMAAVDLKALIGRLDGTCRSTLEGAAGFALMRTHYNVEMEHWLSRLLAEANTDIPLILAHYGVELGAVERDIARSLD
RLKTGNSRPPGLSPDIVETAKQAWLLASIEGGLSQARSGHLLWAMLSDSSLALKLNDMSAGFKTLSADALQKDFASITAG
SSEQQAALAQPAPGFAAPGTGGKAGDALAQYTVDLTAEAKAGRIDPIIGRDSEIRQIVDILIRRRQNNPILTGEAGVGKT
AVVEGFALRIAAGDVPPALRNVVLRTLDLGLLQAGASMKGEFESRLRAVIDGVKASPVPIILFIDEAHTLIGAGGAAGQG
DAANLLKPALARGELRTIAATTWAEYKKYFEKDAALTRRFQVVKVEEPSEPIAIAMLRGLVPTLEGYHKVRILDEALSEA
VRLSARFIPSRQLPDKGVSLLDTACSRVAVSQTTIPAAIDDRNRRIELIDAEMVLITREQASGVDHTKRAETLAAERATL
DAERITLTERWEAELALVKSLGDLRTQLEAEAEATAHDALRVKYAEESAKLAELQGEAPLVFPLVDGQAIAEVVENWTGI
PAGRMRSDEIRNVLGLQATMEQRVVGQSHAIAAVAQAIRTSRAGMTDPRKPLGVFLMVGPSGVGKTETALTLADQLYGGE
QNLTTINMSEYKEEHKVSLLMGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAHPGVQDIFFQVFDKGSMKDGEGRE
IDFKNTVIIMTSNAASDLITKLCADPETMPEPGVLAQALRPELEKYYKAAFLGRVTLVPYLPLTDAIIRQIVVLQLGRIR
NRVMEAYGASFTYAPELVETIAARCTESASGARNIENILSRTLLPELSGHLLEAMAQAKPITAISVGLKEDGQFSYQLQ

Sequences:

>Translated_879_residues
METRMAAVDLKALIGRLDGTCRSTLEGAAGFALMRTHYNVEMEHWLSRLLAEANTDIPLILAHYGVELGAVERDIARSLD
RLKTGNSRPPGLSPDIVETAKQAWLLASIEGGLSQARSGHLLWAMLSDSSLALKLNDMSAGFKTLSADALQKDFASITAG
SSEQQAALAQPAPGFAAPGTGGKAGDALAQYTVDLTAEAKAGRIDPIIGRDSEIRQIVDILIRRRQNNPILTGEAGVGKT
AVVEGFALRIAAGDVPPALRNVVLRTLDLGLLQAGASMKGEFESRLRAVIDGVKASPVPIILFIDEAHTLIGAGGAAGQG
DAANLLKPALARGELRTIAATTWAEYKKYFEKDAALTRRFQVVKVEEPSEPIAIAMLRGLVPTLEGYHKVRILDEALSEA
VRLSARFIPSRQLPDKGVSLLDTACSRVAVSQTTIPAAIDDRNRRIELIDAEMVLITREQASGVDHTKRAETLAAERATL
DAERITLTERWEAELALVKSLGDLRTQLEAEAEATAHDALRVKYAEESAKLAELQGEAPLVFPLVDGQAIAEVVENWTGI
PAGRMRSDEIRNVLGLQATMEQRVVGQSHAIAAVAQAIRTSRAGMTDPRKPLGVFLMVGPSGVGKTETALTLADQLYGGE
QNLTTINMSEYKEEHKVSLLMGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAHPGVQDIFFQVFDKGSMKDGEGRE
IDFKNTVIIMTSNAASDLITKLCADPETMPEPGVLAQALRPELEKYYKAAFLGRVTLVPYLPLTDAIIRQIVVLQLGRIR
NRVMEAYGASFTYAPELVETIAARCTESASGARNIENILSRTLLPELSGHLLEAMAQAKPITAISVGLKEDGQFSYQLQ
>Mature_879_residues
METRMAAVDLKALIGRLDGTCRSTLEGAAGFALMRTHYNVEMEHWLSRLLAEANTDIPLILAHYGVELGAVERDIARSLD
RLKTGNSRPPGLSPDIVETAKQAWLLASIEGGLSQARSGHLLWAMLSDSSLALKLNDMSAGFKTLSADALQKDFASITAG
SSEQQAALAQPAPGFAAPGTGGKAGDALAQYTVDLTAEAKAGRIDPIIGRDSEIRQIVDILIRRRQNNPILTGEAGVGKT
AVVEGFALRIAAGDVPPALRNVVLRTLDLGLLQAGASMKGEFESRLRAVIDGVKASPVPIILFIDEAHTLIGAGGAAGQG
DAANLLKPALARGELRTIAATTWAEYKKYFEKDAALTRRFQVVKVEEPSEPIAIAMLRGLVPTLEGYHKVRILDEALSEA
VRLSARFIPSRQLPDKGVSLLDTACSRVAVSQTTIPAAIDDRNRRIELIDAEMVLITREQASGVDHTKRAETLAAERATL
DAERITLTERWEAELALVKSLGDLRTQLEAEAEATAHDALRVKYAEESAKLAELQGEAPLVFPLVDGQAIAEVVENWTGI
PAGRMRSDEIRNVLGLQATMEQRVVGQSHAIAAVAQAIRTSRAGMTDPRKPLGVFLMVGPSGVGKTETALTLADQLYGGE
QNLTTINMSEYKEEHKVSLLMGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAHPGVQDIFFQVFDKGSMKDGEGRE
IDFKNTVIIMTSNAASDLITKLCADPETMPEPGVLAQALRPELEKYYKAAFLGRVTLVPYLPLTDAIIRQIVVLQLGRIR
NRVMEAYGASFTYAPELVETIAARCTESASGARNIENILSRTLLPELSGHLLEAMAQAKPITAISVGLKEDGQFSYQLQ

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=300, Percent_Identity=32.6666666666667, Blast_Score=164, Evalue=3e-40,
Organism=Escherichia coli, GI1788943, Length=876, Percent_Identity=39.8401826484018, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1787109, Length=286, Percent_Identity=41.6083916083916, Blast_Score=229, Evalue=5e-61,
Organism=Saccharomyces cerevisiae, GI6320464, Length=692, Percent_Identity=38.5838150289017, Blast_Score=447, Evalue=1e-126,
Organism=Saccharomyces cerevisiae, GI6323002, Length=778, Percent_Identity=33.9331619537275, Blast_Score=433, Evalue=1e-122,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 94736; Mature: 94736

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRMAAVDLKALIGRLDGTCRSTLEGAAGFALMRTHYNVEMEHWLSRLLAEANTDIPLI
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEHHCCCCCHHHHHHHHHHHCCCCCCEE
LAHYGVELGAVERDIARSLDRLKTGNSRPPGLSPDIVETAKQAWLLASIEGGLSQARSGH
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEHHHHHHHHHCCCCC
LLWAMLSDSSLALKLNDMSAGFKTLSADALQKDFASITAGSSEQQAALAQPAPGFAAPGT
EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
GGKAGDALAQYTVDLTAEAKAGRIDPIIGRDSEIRQIVDILIRRRQNNPILTGEAGVGKT
CCCCCHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCH
AVVEGFALRIAAGDVPPALRNVVLRTLDLGLLQAGASMKGEFESRLRAVIDGVKASPVPI
HHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEE
ILFIDEAHTLIGAGGAAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALTRRF
EEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
QVVKVEEPSEPIAIAMLRGLVPTLEGYHKVRILDEALSEAVRLSARFIPSRQLPDKGVSL
EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LDTACSRVAVSQTTIPAAIDDRNRRIELIDAEMVLITREQASGVDHTKRAETLAAERATL
HHHHHHHHHHCCCCCCCEECCCCCEEEEEECEEEEEEECHHCCCCHHHHHHHHHHHHHHC
DAERITLTERWEAELALVKSLGDLRTQLEAEAEATAHDALRVKYAEESAKLAELQGEAPL
CHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHCCCCCE
VFPLVDGQAIAEVVENWTGIPAGRMRSDEIRNVLGLQATMEQRVVGQSHAIAAVAQAIRT
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SRAGMTDPRKPLGVFLMVGPSGVGKTETALTLADQLYGGEQNLTTINMSEYKEEHKVSLL
HCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCEEEE
MGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAHPGVQDIFFQVFDKGSMKDGEGRE
ECCCCCEEECCCCCHHHHHHHCCCCEEEEEECHHHHCCCHHHHHHHHHCCCCCCCCCCCE
IDFKNTVIIMTSNAASDLITKLCADPETMPEPGVLAQALRPELEKYYKAAFLGRVTLVPY
EECCCEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
LPLTDAIIRQIVVLQLGRIRNRVMEAYGASFTYAPELVETIAARCTESASGARNIENILS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
RTLLPELSGHLLEAMAQAKPITAISVGLKEDGQFSYQLQ
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC
>Mature Secondary Structure
METRMAAVDLKALIGRLDGTCRSTLEGAAGFALMRTHYNVEMEHWLSRLLAEANTDIPLI
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEHHCCCCCHHHHHHHHHHHCCCCCCEE
LAHYGVELGAVERDIARSLDRLKTGNSRPPGLSPDIVETAKQAWLLASIEGGLSQARSGH
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEHHHHHHHHHCCCCC
LLWAMLSDSSLALKLNDMSAGFKTLSADALQKDFASITAGSSEQQAALAQPAPGFAAPGT
EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
GGKAGDALAQYTVDLTAEAKAGRIDPIIGRDSEIRQIVDILIRRRQNNPILTGEAGVGKT
CCCCCHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCH
AVVEGFALRIAAGDVPPALRNVVLRTLDLGLLQAGASMKGEFESRLRAVIDGVKASPVPI
HHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEE
ILFIDEAHTLIGAGGAAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALTRRF
EEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
QVVKVEEPSEPIAIAMLRGLVPTLEGYHKVRILDEALSEAVRLSARFIPSRQLPDKGVSL
EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LDTACSRVAVSQTTIPAAIDDRNRRIELIDAEMVLITREQASGVDHTKRAETLAAERATL
HHHHHHHHHHCCCCCCCEECCCCCEEEEEECEEEEEEECHHCCCCHHHHHHHHHHHHHHC
DAERITLTERWEAELALVKSLGDLRTQLEAEAEATAHDALRVKYAEESAKLAELQGEAPL
CHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHCCCCCE
VFPLVDGQAIAEVVENWTGIPAGRMRSDEIRNVLGLQATMEQRVVGQSHAIAAVAQAIRT
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SRAGMTDPRKPLGVFLMVGPSGVGKTETALTLADQLYGGEQNLTTINMSEYKEEHKVSLL
HCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCEEEE
MGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAHPGVQDIFFQVFDKGSMKDGEGRE
ECCCCCEEECCCCCHHHHHHHCCCCEEEEEECHHHHCCCHHHHHHHHHCCCCCCCCCCCE
IDFKNTVIIMTSNAASDLITKLCADPETMPEPGVLAQALRPELEKYYKAAFLGRVTLVPY
EECCCEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
LPLTDAIIRQIVVLQLGRIRNRVMEAYGASFTYAPELVETIAARCTESASGARNIENILS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
RTLLPELSGHLLEAMAQAKPITAISVGLKEDGQFSYQLQ
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]