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The map label for this gene is rarA [H]

Identifier: 158424151

GI number: 158424151

Start: 2863737

End: 2865146

Strand: Reverse

Name: rarA [H]

Synonym: AZC_2527

Alternate gene names: 158424151

Gene position: 2865146-2863737 (Counterclockwise)

Preceding gene: 158424152

Following gene: 158424150

Centisome position: 53.36

GC content: 68.37

Gene sequence:

>1410_bases
ATGCCCGCCGGCTGGCGGGCGGGACACGAAACACCATCTATCAAGGGCTGCCGGTTGCCGGCGGCCCTTGTCCGCGTGAT
GCGCGGACCCCGGAGACACCTGATGACCCTGTCGCTGTTCGAGGAGGCTGCCCCGCGTCCACTGGCCGAGGTGCTGCGCC
CGCAGCGGCTGGAGGATGTGATCGGGCAGGAGCATCTGCTCGGCCCGGAGGGTCCCATCGGGCGGATGGTGAAAGGCAAG
CGGCTCTCCTCCTTCATCCTCTGGGGGCCGCCCGGCTCGGGCAAGACCACCATCGCCCGCCTCGTCGCGCGCGGACTTGG
CTTCGAGTTCGTGCAGTTGTCCGCCGTGCTTTCCGGCGTCGCGGACCTGCGCAAGGTGGTGGAGACCGCCCGGCAGTTGC
GCACGGGTTCGGGGCGCCAGACGGCGGTGTTCGTGGACGAACTGCATCGCTTCAACCGCACCACACAGGATGCGCTGCTC
CCCCATGTGGAGGACGGCACCATCGTTCTGATCGGCGCCACCACGGAAAACCCGAGCTTCTCCATGGTGGCCGCGCTGCT
GTCGCGGGCCAAGGTCTATACGCTGCGCCGGCTGGAGAAGGCGGATCTCGCCCGCCTGCTGGAGCGGGCCGAGGCCCATG
CCGGCCGCTGCCTGCCGCTGGACGCCCAGGCCCGCGAGGCGCTGACCGAGATGGCGGACGGCGACGGGCGCTATCTGCTG
GGCCTCGTGGAGGAACTTCTGGCGCTCCCGCCGGGGCCGGACCTCGATCTGGAGGCCCTGGCCCAGACGGTGCAGAAGCG
CGCGCCCGTTTATGACAAGGCGCAGGAGGAGCACTACAACCTGCTCTCCTGCTTCCACAAAAGCCTGCGCGGTTCGGATG
TGAATGCGGCCATGTACTGGGCCGCGCGCATGATGACCGGCGGCGAGGACCCGGGCACCATCTTCCGCCGGCTTGCCTGC
TGCGCCTCCGAGGATGTCGGCATGGCCGATCCGCAGGCCATGCCGCAGGTGATCGCCGCCTGGACCGCCTTCGAGCGCGT
GGGCTGGCCGGAAGGCCGACTGTTCATGGCGCAGGCCATCGCCTATGTGGCGACCGCGCCGAAATCCAACGCCGCCTATT
CCGCCTTCAATGCAGCCTTAGCGCTGGCGCAGAAGACAGGCTCGCTCGCCCCGCCCAAGCACATCCTGAATGCGCCGACC
AAGCTCATGAAGGAACTCGGTTACCACGCGGGCTATCGCTACGATCACGATTATCCCGACGCCTATGCGGGGCAGGAATT
CTTCCCCGACGAGCTCGCGGGCGACCATCGCCCGGACCTCTACCAGCCCAATGAGCGCGGCTTCGAGCGCGAGGTGAAGA
AGCGCCTCGACTATTGGGCCCGCCTGAAGGCGGACCGGGCCTCCGACTGA

Upstream 100 bases:

>100_bases
AGGATCTGGTGGCCGCCACCCGCACCCCGTCCCGCGCCTGGAAGGTGACGGTGGCTCGCGGCGGGCGCACCATCACTGCC
GTTCTCGGCGGCTGAGTCGC

Downstream 100 bases:

>100_bases
GGGGCGGGTGCCTTGAGGCCGAAAGCGGAGGAGGCGCGTCGATGTTTGTGAATGCCGACGCCCTGTTCAACGTGCTGGTG
CTGTTCAACGTGGTCGTGGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MPAGWRAGHETPSIKGCRLPAALVRVMRGPRRHLMTLSLFEEAAPRPLAEVLRPQRLEDVIGQEHLLGPEGPIGRMVKGK
RLSSFILWGPPGSGKTTIARLVARGLGFEFVQLSAVLSGVADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALL
PHVEDGTIVLIGATTENPSFSMVAALLSRAKVYTLRRLEKADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLL
GLVEELLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYWAARMMTGGEDPGTIFRRLAC
CASEDVGMADPQAMPQVIAAWTAFERVGWPEGRLFMAQAIAYVATAPKSNAAYSAFNAALALAQKTGSLAPPKHILNAPT
KLMKELGYHAGYRYDHDYPDAYAGQEFFPDELAGDHRPDLYQPNERGFEREVKKRLDYWARLKADRASD

Sequences:

>Translated_469_residues
MPAGWRAGHETPSIKGCRLPAALVRVMRGPRRHLMTLSLFEEAAPRPLAEVLRPQRLEDVIGQEHLLGPEGPIGRMVKGK
RLSSFILWGPPGSGKTTIARLVARGLGFEFVQLSAVLSGVADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALL
PHVEDGTIVLIGATTENPSFSMVAALLSRAKVYTLRRLEKADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLL
GLVEELLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYWAARMMTGGEDPGTIFRRLAC
CASEDVGMADPQAMPQVIAAWTAFERVGWPEGRLFMAQAIAYVATAPKSNAAYSAFNAALALAQKTGSLAPPKHILNAPT
KLMKELGYHAGYRYDHDYPDAYAGQEFFPDELAGDHRPDLYQPNERGFEREVKKRLDYWARLKADRASD
>Mature_468_residues
PAGWRAGHETPSIKGCRLPAALVRVMRGPRRHLMTLSLFEEAAPRPLAEVLRPQRLEDVIGQEHLLGPEGPIGRMVKGKR
LSSFILWGPPGSGKTTIARLVARGLGFEFVQLSAVLSGVADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALLP
HVEDGTIVLIGATTENPSFSMVAALLSRAKVYTLRRLEKADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLLG
LVEELLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYWAARMMTGGEDPGTIFRRLACC
ASEDVGMADPQAMPQVIAAWTAFERVGWPEGRLFMAQAIAYVATAPKSNAAYSAFNAALALAQKTGSLAPPKHILNAPTK
LMKELGYHAGYRYDHDYPDAYAGQEFFPDELAGDHRPDLYQPNERGFEREVKKRLDYWARLKADRASD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=433, Percent_Identity=40.6466512702078, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI18426904, Length=433, Percent_Identity=36.0277136258661, Blast_Score=248, Evalue=7e-66,
Organism=Escherichia coli, GI1787119, Length=439, Percent_Identity=45.7858769931663, Blast_Score=367, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=38.6255924170616, Blast_Score=295, Evalue=8e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 51688; Mature: 51557

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAGWRAGHETPSIKGCRLPAALVRVMRGPRRHLMTLSLFEEAAPRPLAEVLRPQRLEDV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH
IGQEHLLGPEGPIGRMVKGKRLSSFILWGPPGSGKTTIARLVARGLGFEFVQLSAVLSGV
HCHHHCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
ADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALLPHVEDGTIVLIGATTENPSF
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCH
SMVAALLSRAKVYTLRRLEKADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
GLVEELLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYW
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AARMMTGGEDPGTIFRRLACCASEDVGMADPQAMPQVIAAWTAFERVGWPEGRLFMAQAI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AYVATAPKSNAAYSAFNAALALAQKTGSLAPPKHILNAPTKLMKELGYHAGYRYDHDYPD
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCC
AYAGQEFFPDELAGDHRPDLYQPNERGFEREVKKRLDYWARLKADRASD
CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PAGWRAGHETPSIKGCRLPAALVRVMRGPRRHLMTLSLFEEAAPRPLAEVLRPQRLEDV
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH
IGQEHLLGPEGPIGRMVKGKRLSSFILWGPPGSGKTTIARLVARGLGFEFVQLSAVLSGV
HCHHHCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
ADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALLPHVEDGTIVLIGATTENPSF
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCH
SMVAALLSRAKVYTLRRLEKADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
GLVEELLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYW
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AARMMTGGEDPGTIFRRLACCASEDVGMADPQAMPQVIAAWTAFERVGWPEGRLFMAQAI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AYVATAPKSNAAYSAFNAALALAQKTGSLAPPKHILNAPTKLMKELGYHAGYRYDHDYPD
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCC
AYAGQEFFPDELAGDHRPDLYQPNERGFEREVKKRLDYWARLKADRASD
CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]