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The map label for this gene is araJ [H]

Identifier: 158424138

GI number: 158424138

Start: 2850502

End: 2851710

Strand: Reverse

Name: araJ [H]

Synonym: AZC_2514

Alternate gene names: 158424138

Gene position: 2851710-2850502 (Counterclockwise)

Preceding gene: 158424140

Following gene: 158424135

Centisome position: 53.11

GC content: 67.82

Gene sequence:

>1209_bases
ATGTCCTTTCTGCTTATTCTTGGCCTTGCGGACTTCGCCAGCGCTTTTACGGCGCGTTCCGTCGATCCGATGCTCAATCT
TTTGGCGTCTGATCTTGGCGTTTCGCTCCAGGCCGCGGCCCTGCTCGCAACCGCCTTCACGCTGCCCTATGCGCTGATGC
AACTGGTGTTCGGGCCCATCGGCGATGCCTTCGGCCGGGTGCGGCTTATCCGCATCACGCTCGCCTGCCTCACCATCGGC
CATCTGGCCTGTGCCCTTGCGCCGAACCATCCGGTGCTGGTGGCGGCGCGGGTGTTCGCCGGCGGTTGGGCGGGCGGCAT
CATTCCCGTGTCCTTCGCCATCGTGGGCGATCGCGTCGCCTTCGAGCAGCGCACCGTGGCGCTCGGCCGCCTGCTGCTGG
CCGTGGTGCTGGGGCAGTTGGGGGGCGCCATCATCTCCGGCACGCTCGCCACCTATTTCGGCTGGCGCACGGTATTTTTC
GCTGCAGCGGCCGTTTCCGCCGCCGCGACCTTGTGCACCATCCTGTTCCTGAAGGAACTGGGTGCCCGCAAGCCCATCTC
GGTGGCCGCGACGCTGGAGGGCTATCGCACCGTCTTCCGCAATCCGGTCTCCATCCGCCATTTTGCCGTGTCGGCGGTGG
AGGGCGGCATCATCTTCGGCGTCTTCCCCTTCGTGGCGCCGCTGATGGTCGAGTTCCACATCGGCGACGCGGTGGAGGCG
GGCATTGCCATGGGCGCCTTTGCCATCGGCGGCGTGCTCTATAGCGTGGTGGTGCAGAAGCTCGTGGATCTGCTGGGCCT
CAGCGGCATGGCGGCGACGGGCGCGCTCATCGTCGGCTGCTGCCTCATCGGCATCGCCTTCGCCCCCTCGCTCGTGTTCA
TGATGGCGCTGTTCGGCGTCATGGGCTTCGGCTTCTACACCATCCACAACACGCTTCAGATCATGTCCACCGAGCTGGCG
CCCAGCGCGCGCGGCTCGGGCGTGTCGCTCTATGCCACCTTCTTCTTCGCCGGGCAGGCCTTCGGCGCGGTGGTGGCGGG
GGCGGTGTCGCACGCGGTGGGCTCGCTGCCCGGCATGTTCGTGGTGGCGGGGCTTGCCATGTTCGCGCTGGCCTGGCCGG
CCTCACGCCTCGCGCCCTTGGCCGAGCGTGTGCGCCGGGAGGCGGAGGAGACCGCCGCCCGCAAGGTCCAGTCGGTGGAG
CCGGTCTGA

Upstream 100 bases:

>100_bases
CGCATGCCATGCAATTCCGCTGCTTGACCGGCCCGCCGGCCCGTCGGAGACAGGACGGGACGGCGCACCGGGCGCCCTTC
CGTCCCTAGTGTAGCCCCCC

Downstream 100 bases:

>100_bases
GCCGCGACAGGCGCCTCAGACTCTCGGGACCGCGCTCCGGGGCTCAGATGTCGAGCAGTTCCTCGCCCGCGAAGGCGGCG
TGCTCGGAGATGAAGGCGAA

Product: arabinose efflux permease

Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSFLLILGLADFASAFTARSVDPMLNLLASDLGVSLQAAALLATAFTLPYALMQLVFGPIGDAFGRVRLIRITLACLTIG
HLACALAPNHPVLVAARVFAGGWAGGIIPVSFAIVGDRVAFEQRTVALGRLLLAVVLGQLGGAIISGTLATYFGWRTVFF
AAAAVSAAATLCTILFLKELGARKPISVAATLEGYRTVFRNPVSIRHFAVSAVEGGIIFGVFPFVAPLMVEFHIGDAVEA
GIAMGAFAIGGVLYSVVVQKLVDLLGLSGMAATGALIVGCCLIGIAFAPSLVFMMALFGVMGFGFYTIHNTLQIMSTELA
PSARGSGVSLYATFFFAGQAFGAVVAGAVSHAVGSLPGMFVVAGLAMFALAWPASRLAPLAERVRREAEETAARKVQSVE
PV

Sequences:

>Translated_402_residues
MSFLLILGLADFASAFTARSVDPMLNLLASDLGVSLQAAALLATAFTLPYALMQLVFGPIGDAFGRVRLIRITLACLTIG
HLACALAPNHPVLVAARVFAGGWAGGIIPVSFAIVGDRVAFEQRTVALGRLLLAVVLGQLGGAIISGTLATYFGWRTVFF
AAAAVSAAATLCTILFLKELGARKPISVAATLEGYRTVFRNPVSIRHFAVSAVEGGIIFGVFPFVAPLMVEFHIGDAVEA
GIAMGAFAIGGVLYSVVVQKLVDLLGLSGMAATGALIVGCCLIGIAFAPSLVFMMALFGVMGFGFYTIHNTLQIMSTELA
PSARGSGVSLYATFFFAGQAFGAVVAGAVSHAVGSLPGMFVVAGLAMFALAWPASRLAPLAERVRREAEETAARKVQSVE
PV
>Mature_401_residues
SFLLILGLADFASAFTARSVDPMLNLLASDLGVSLQAAALLATAFTLPYALMQLVFGPIGDAFGRVRLIRITLACLTIGH
LACALAPNHPVLVAARVFAGGWAGGIIPVSFAIVGDRVAFEQRTVALGRLLLAVVLGQLGGAIISGTLATYFGWRTVFFA
AAAVSAAATLCTILFLKELGARKPISVAATLEGYRTVFRNPVSIRHFAVSAVEGGIIFGVFPFVAPLMVEFHIGDAVEAG
IAMGAFAIGGVLYSVVVQKLVDLLGLSGMAATGALIVGCCLIGIAFAPSLVFMMALFGVMGFGFYTIHNTLQIMSTELAP
SARGSGVSLYATFFFAGQAFGAVVAGAVSHAVGSLPGMFVVAGLAMFALAWPASRLAPLAERVRREAEETAARKVQSVEP
V

Specific function: Translocase That Confers Resistance To Substances Of High Hydrophobicity. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001958 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41620; Mature: 41489

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLLILGLADFASAFTARSVDPMLNLLASDLGVSLQAAALLATAFTLPYALMQLVFGPI
CCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GDAFGRVRLIRITLACLTIGHLACALAPNHPVLVAARVFAGGWAGGIIPVSFAIVGDRVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCHHHHHHHHCCCHHH
FEQRTVALGRLLLAVVLGQLGGAIISGTLATYFGWRTVFFAAAAVSAAATLCTILFLKEL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARKPISVAATLEGYRTVFRNPVSIRHFAVSAVEGGIIFGVFPFVAPLMVEFHIGDAVEA
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
GIAMGAFAIGGVLYSVVVQKLVDLLGLSGMAATGALIVGCCLIGIAFAPSLVFMMALFGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGFGFYTIHNTLQIMSTELAPSARGSGVSLYATFFFAGQAFGAVVAGAVSHAVGSLPGMF
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VVAGLAMFALAWPASRLAPLAERVRREAEETAARKVQSVEPV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SFLLILGLADFASAFTARSVDPMLNLLASDLGVSLQAAALLATAFTLPYALMQLVFGPI
CCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GDAFGRVRLIRITLACLTIGHLACALAPNHPVLVAARVFAGGWAGGIIPVSFAIVGDRVA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCHHHHHHHHCCCHHH
FEQRTVALGRLLLAVVLGQLGGAIISGTLATYFGWRTVFFAAAAVSAAATLCTILFLKEL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARKPISVAATLEGYRTVFRNPVSIRHFAVSAVEGGIIFGVFPFVAPLMVEFHIGDAVEA
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
GIAMGAFAIGGVLYSVVVQKLVDLLGLSGMAATGALIVGCCLIGIAFAPSLVFMMALFGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGFGFYTIHNTLQIMSTELAPSARGSGVSLYATFFFAGQAFGAVVAGAVSHAVGSLPGMF
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VVAGLAMFALAWPASRLAPLAERVRREAEETAARKVQSVEPV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]

Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]