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The map label for this gene is gntR [H]

Identifier: 158424078

GI number: 158424078

Start: 2789609

End: 2790409

Strand: Reverse

Name: gntR [H]

Synonym: AZC_2454

Alternate gene names: 158424078

Gene position: 2790409-2789609 (Counterclockwise)

Preceding gene: 158424079

Following gene: 158424075

Centisome position: 51.97

GC content: 69.29

Gene sequence:

>801_bases
ATGGATCGGGATGACGACCGCTTCGTTTCGGCGCATCGTCCCGCCACCACTTGGGGGATGCGCATGGAACGCTTGCAGGC
CCTAGGCCTCGCGCTTCCGGGAGACGAGACCGGGCCGCGCCGGTTGACGGCCGCGAGCGTCGTCTACCATCAGTTGCGGG
ACGAGATCGTATCCCTGAAGCGGGTTCCCGGCGAGGTGATCGCCGAAAAGGAGATCGCGGCGGCCCATGGGCTCAGCCGC
ACGCCGGTGCGCGAGGCGCTGCTGCGGCTGGCGGACGAGGGGCTGGTGGAGATCGCCCCCAAGTCCGGCACCTATGTCTC
CCGCATTCCGCTGGCGAGCCTGCACGAGGCCATGATCGCCCGCGCGGCGCTGGAGGACGTCACCGCCCAGGCGGCCGCCG
AAAAGGCGAGCGCGGCGGACCTCAAGCGGCTCGACGCGGTGATCGCGGACGAAATGGCCGTGGCGGCGCGGGGCGACCAT
CGTGCTTTCCATGCGGCGGATGATGCCTTGCACCAGACCATTGCCGAGATCGCCGGCCTGCCCGGCATCTGGCGGCTGGT
CCTGCATCTGAAGACGCAGGTGGACCGTTGCCGCCATCTGAGCCTGCCCCATCCGGGCCGCATGGACCGGGTGATCCGCG
AGCATAGCGAGATCGTCGCGGCCATCGCAGCCCATGACGTGGAAGCGGCCTCGGCCGCCATGCGACGGCACGTGAAGACG
CTGCACGGCAGCCTCGGCCTGATCCGCGACGTCAATCCCGACTATTTCGACGCCGATCCCCGCGGGGTCATTGCGGGCTG
A

Upstream 100 bases:

>100_bases
CTGCGCGGCGGCGTGGCGGGCAAGGGGGGAGGTTTTGCCGCATAGCAGGGGCGCTGCACCGGCGCTTGCGGGGGGCGCCG
GCGTTTTGTATCGCCTGACC

Downstream 100 bases:

>100_bases
CGGGCGTCGGCGCGGCCAGCCGATCCATATAGAGCCGGACCTGTGCGGCCTCCGCAGCGCTGGGCGCGAGATCTAGGCTT
CGGGCATAGGCCGCGTAAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDRDDDRFVSAHRPATTWGMRMERLQALGLALPGDETGPRRLTAASVVYHQLRDEIVSLKRVPGEVIAEKEIAAAHGLSR
TPVREALLRLADEGLVEIAPKSGTYVSRIPLASLHEAMIARAALEDVTAQAAAEKASAADLKRLDAVIADEMAVAARGDH
RAFHAADDALHQTIAEIAGLPGIWRLVLHLKTQVDRCRHLSLPHPGRMDRVIREHSEIVAAIAAHDVEAASAAMRRHVKT
LHGSLGLIRDVNPDYFDADPRGVIAG

Sequences:

>Translated_266_residues
MDRDDDRFVSAHRPATTWGMRMERLQALGLALPGDETGPRRLTAASVVYHQLRDEIVSLKRVPGEVIAEKEIAAAHGLSR
TPVREALLRLADEGLVEIAPKSGTYVSRIPLASLHEAMIARAALEDVTAQAAAEKASAADLKRLDAVIADEMAVAARGDH
RAFHAADDALHQTIAEIAGLPGIWRLVLHLKTQVDRCRHLSLPHPGRMDRVIREHSEIVAAIAAHDVEAASAAMRRHVKT
LHGSLGLIRDVNPDYFDADPRGVIAG
>Mature_266_residues
MDRDDDRFVSAHRPATTWGMRMERLQALGLALPGDETGPRRLTAASVVYHQLRDEIVSLKRVPGEVIAEKEIAAAHGLSR
TPVREALLRLADEGLVEIAPKSGTYVSRIPLASLHEAMIARAALEDVTAQAAAEKASAADLKRLDAVIADEMAVAARGDH
RAFHAADDALHQTIAEIAGLPGIWRLVLHLKTQVDRCRHLSLPHPGRMDRVIREHSEIVAAIAAHDVEAASAAMRRHVKT
LHGSLGLIRDVNPDYFDADPRGVIAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=31.6037735849057, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1790780, Length=231, Percent_Identity=29.004329004329, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28883; Mature: 28883

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHCCCHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]